Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3566 and Psyr_3567 are separated by 72 nucleotides Psyr_3567 and Psyr_3568 are separated by 22 nucleotides
Psyr_3566: Psyr_3566 - transcriptional regulator, AraC family, at 4,247,934 to 4,248,989
_3566
Psyr_3567: Psyr_3567 - L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein, at 4,249,062 to 4,249,826
_3567
Psyr_3568: Psyr_3568 - Succinylglutamate desuccinylase/aspartoacylase, at 4,249,849 to 4,250,961
_3568
Position (kb) 4249
4250 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.148 kb on + strand, within Psyr_3566 at 4248.149 kb on - strand, within Psyr_3566 at 4248.149 kb on - strand, within Psyr_3566 at 4248.173 kb on - strand, within Psyr_3566 at 4248.173 kb on - strand, within Psyr_3566 at 4248.814 kb on + strand, within Psyr_3566 at 4248.814 kb on + strand, within Psyr_3566 at 4248.814 kb on + strand, within Psyr_3566 at 4248.814 kb on + strand, within Psyr_3566 at 4248.815 kb on - strand, within Psyr_3566 at 4248.909 kb on + strand at 4248.909 kb on + strand at 4248.943 kb on + strand at 4248.943 kb on + strand at 4248.943 kb on + strand at 4248.944 kb on - strand at 4248.944 kb on - strand at 4248.944 kb on - strand at 4248.972 kb on + strand at 4248.973 kb on - strand at 4248.973 kb on - strand at 4248.973 kb on - strand at 4249.033 kb on - strand at 4249.033 kb on - strand at 4249.261 kb on - strand, within Psyr_3567 at 4249.429 kb on + strand, within Psyr_3567 at 4249.430 kb on - strand, within Psyr_3567 at 4249.430 kb on - strand, within Psyr_3567 at 4249.790 kb on - strand at 4249.845 kb on - strand at 4249.845 kb on - strand at 4249.925 kb on + strand at 4249.926 kb on - strand at 4249.962 kb on + strand, within Psyr_3568 at 4250.084 kb on + strand, within Psyr_3568 at 4250.085 kb on - strand, within Psyr_3568 at 4250.085 kb on - strand, within Psyr_3568 at 4250.187 kb on + strand, within Psyr_3568 at 4250.429 kb on + strand, within Psyr_3568 at 4250.429 kb on + strand, within Psyr_3568 at 4250.429 kb on + strand, within Psyr_3568 at 4250.429 kb on + strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568 at 4250.430 kb on - strand, within Psyr_3568
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,248,146 - Psyr_3566 0.20 +2.0 4,248,146 - Psyr_3566 0.20 +1.2 4,248,146 - Psyr_3566 0.20 +0.8 4,248,146 - Psyr_3566 0.20 +0.2 4,248,148 + Psyr_3566 0.20 -0.3 4,248,149 - Psyr_3566 0.20 -0.4 4,248,149 - Psyr_3566 0.20 -1.0 4,248,173 - Psyr_3566 0.23 -0.6 4,248,173 - Psyr_3566 0.23 -0.1 4,248,814 + Psyr_3566 0.83 -0.0 4,248,814 + Psyr_3566 0.83 -0.3 4,248,814 + Psyr_3566 0.83 +0.1 4,248,814 + Psyr_3566 0.83 +0.7 4,248,815 - Psyr_3566 0.83 -0.9 4,248,909 + -0.0 4,248,909 + +1.0 4,248,943 + +1.3 4,248,943 + -0.9 4,248,943 + +0.3 4,248,944 - +1.1 4,248,944 - +0.8 4,248,944 - +0.7 4,248,972 + -2.7 4,248,973 - -0.9 4,248,973 - -0.5 4,248,973 - -0.7 4,249,033 - -0.3 4,249,033 - -1.6 4,249,261 - Psyr_3567 0.26 -2.3 4,249,429 + Psyr_3567 0.48 -0.4 4,249,430 - Psyr_3567 0.48 -0.8 4,249,430 - Psyr_3567 0.48 -0.3 4,249,790 - +0.2 4,249,845 - -1.2 4,249,845 - +0.7 4,249,925 + +0.5 4,249,926 - -0.5 4,249,962 + Psyr_3568 0.10 -1.6 4,250,084 + Psyr_3568 0.21 +0.7 4,250,085 - Psyr_3568 0.21 +0.4 4,250,085 - Psyr_3568 0.21 +0.0 4,250,187 + Psyr_3568 0.30 +2.0 4,250,429 + Psyr_3568 0.52 +0.1 4,250,429 + Psyr_3568 0.52 -0.2 4,250,429 + Psyr_3568 0.52 -0.5 4,250,429 + Psyr_3568 0.52 +0.0 4,250,430 - Psyr_3568 0.52 -0.6 4,250,430 - Psyr_3568 0.52 +0.4 4,250,430 - Psyr_3568 0.52 +0.3 4,250,430 - Psyr_3568 0.52 -0.3 4,250,430 - Psyr_3568 0.52 +0.3 4,250,430 - Psyr_3568 0.52 +0.4 4,250,430 - Psyr_3568 0.52 +1.3 4,250,430 - Psyr_3568 0.52 -0.1 4,250,430 - Psyr_3568 0.52 -0.9 4,250,430 - Psyr_3568 0.52 +2.0
Or see this region's nucleotide sequence