Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3547

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3546 and Psyr_3547 are separated by 21 nucleotidesPsyr_3547 and Psyr_3548 are separated by 210 nucleotides Psyr_3546: Psyr_3546 - transcriptional regulator, AraC family, at 4,223,650 to 4,224,558 _3546 Psyr_3547: Psyr_3547 - transcriptional regulator, TetR family, at 4,224,580 to 4,225,143 _3547 Psyr_3548: Psyr_3548 - Glutathione S-transferase, N-terminal, at 4,225,354 to 4,226,055 _3548 Position (kb) 4224 4225 4226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4223.720 kb on + strandat 4223.720 kb on + strandat 4223.721 kb on - strandat 4223.721 kb on - strandat 4223.721 kb on - strandat 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.860 kb on + strand, within Psyr_3546at 4223.861 kb on - strand, within Psyr_3546at 4223.927 kb on - strand, within Psyr_3546at 4224.136 kb on - strand, within Psyr_3546at 4224.136 kb on - strand, within Psyr_3546at 4224.350 kb on - strand, within Psyr_3546at 4224.581 kb on + strandat 4224.582 kb on - strandat 4224.582 kb on - strandat 4224.608 kb on + strandat 4224.608 kb on + strandat 4224.608 kb on + strandat 4224.609 kb on - strandat 4224.640 kb on - strand, within Psyr_3547at 4224.781 kb on + strand, within Psyr_3547at 4224.782 kb on - strand, within Psyr_3547at 4224.782 kb on - strand, within Psyr_3547at 4224.901 kb on + strand, within Psyr_3547at 4224.902 kb on - strand, within Psyr_3547at 4225.016 kb on + strand, within Psyr_3547at 4225.017 kb on - strand, within Psyr_3547at 4225.017 kb on - strand, within Psyr_3547at 4225.019 kb on + strand, within Psyr_3547at 4225.019 kb on + strand, within Psyr_3547at 4225.020 kb on - strand, within Psyr_3547at 4225.023 kb on + strand, within Psyr_3547at 4225.079 kb on + strand, within Psyr_3547at 4225.156 kb on + strandat 4225.156 kb on + strandat 4225.156 kb on + strandat 4225.156 kb on + strandat 4225.157 kb on - strandat 4225.157 kb on - strandat 4225.190 kb on + strandat 4225.190 kb on + strandat 4225.190 kb on + strandat 4225.190 kb on + strandat 4225.190 kb on + strandat 4225.190 kb on + strandat 4225.191 kb on - strandat 4225.191 kb on - strandat 4225.191 kb on - strandat 4225.191 kb on - strandat 4225.213 kb on + strandat 4225.214 kb on - strandat 4225.217 kb on + strandat 4225.218 kb on - strandat 4225.342 kb on - strandat 4225.404 kb on - strandat 4225.404 kb on - strandat 4225.446 kb on - strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4226.073 kb on - strandat 4226.100 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,223,720 + -0.7
4,223,720 + -1.3
4,223,721 - +0.3
4,223,721 - +0.2
4,223,721 - -0.9
4,223,760 + Psyr_3546 0.12 -0.3
4,223,760 + Psyr_3546 0.12 -0.5
4,223,760 + Psyr_3546 0.12 -0.3
4,223,760 + Psyr_3546 0.12 -2.1
4,223,760 + Psyr_3546 0.12 +0.3
4,223,761 - Psyr_3546 0.12 +1.0
4,223,761 - Psyr_3546 0.12 +1.0
4,223,761 - Psyr_3546 0.12 -0.1
4,223,761 - Psyr_3546 0.12 +1.2
4,223,761 - Psyr_3546 0.12 +0.4
4,223,761 - Psyr_3546 0.12 -1.1
4,223,761 - Psyr_3546 0.12 +0.3
4,223,761 - Psyr_3546 0.12 +0.6
4,223,860 + Psyr_3546 0.23 -0.8
4,223,861 - Psyr_3546 0.23 +0.2
4,223,927 - Psyr_3546 0.30 +2.7
4,224,136 - Psyr_3546 0.53 +0.2
4,224,136 - Psyr_3546 0.53 -1.3
4,224,350 - Psyr_3546 0.77 -0.2
4,224,581 + -1.9
4,224,582 - +0.6
4,224,582 - -0.3
4,224,608 + -1.0
4,224,608 + -0.9
4,224,608 + -2.3
4,224,609 - -0.3
4,224,640 - Psyr_3547 0.11 -0.5
4,224,781 + Psyr_3547 0.36 -3.4
4,224,782 - Psyr_3547 0.36 +0.0
4,224,782 - Psyr_3547 0.36 -0.2
4,224,901 + Psyr_3547 0.57 -2.9
4,224,902 - Psyr_3547 0.57 -0.6
4,225,016 + Psyr_3547 0.77 -0.5
4,225,017 - Psyr_3547 0.77 +0.3
4,225,017 - Psyr_3547 0.77 +0.7
4,225,019 + Psyr_3547 0.78 -2.5
4,225,019 + Psyr_3547 0.78 -1.4
4,225,020 - Psyr_3547 0.78 +0.4
4,225,023 + Psyr_3547 0.79 -1.6
4,225,079 + Psyr_3547 0.88 -0.9
4,225,156 + -1.3
4,225,156 + -1.5
4,225,156 + -1.5
4,225,156 + -0.9
4,225,157 - +0.7
4,225,157 - -0.3
4,225,190 + +0.5
4,225,190 + -1.3
4,225,190 + -0.7
4,225,190 + -0.9
4,225,190 + -2.6
4,225,190 + -0.1
4,225,191 - -1.6
4,225,191 - -0.2
4,225,191 - -0.9
4,225,191 - +0.7
4,225,213 + +0.5
4,225,214 - +1.2
4,225,217 + -0.1
4,225,218 - +0.4
4,225,342 - +0.3
4,225,404 - -0.4
4,225,404 - -0.6
4,225,446 - Psyr_3548 0.13 -0.5
4,225,943 + Psyr_3548 0.84 +0.1
4,225,943 + Psyr_3548 0.84 +0.2
4,225,943 + Psyr_3548 0.84 -1.1
4,225,943 + Psyr_3548 0.84 -0.0
4,225,943 + Psyr_3548 0.84 -1.1
4,225,943 + Psyr_3548 0.84 -1.1
4,225,944 - Psyr_3548 0.84 -0.2
4,225,944 - Psyr_3548 0.84 -1.6
4,225,944 - Psyr_3548 0.84 -1.1
4,225,944 - Psyr_3548 0.84 +0.3
4,225,944 - Psyr_3548 0.84 +0.0
4,225,944 - Psyr_3548 0.84 +1.1
4,226,073 - +0.8
4,226,100 + -2.3

Or see this region's nucleotide sequence