Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3427

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3426 and Psyr_3427 are separated by 419 nucleotidesPsyr_3427 and Psyr_3428 are separated by 0 nucleotidesPsyr_3428 and Psyr_3429 are separated by 57 nucleotides Psyr_3426: Psyr_3426 - adenine phosphoribosyltransferase, at 4,090,266 to 4,090,814 _3426 Psyr_3427: Psyr_3427 - conserved hypothetical protein, at 4,091,234 to 4,091,635 _3427 Psyr_3428: Psyr_3428 - CheW-like protein, at 4,091,636 to 4,092,115 _3428 Psyr_3429: Psyr_3429 - CheW-like protein, at 4,092,173 to 4,093,075 _3429 Position (kb) 4091 4092Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4090.410 kb on + strand, within Psyr_3426at 4090.410 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.540 kb on + strand, within Psyr_3426at 4090.541 kb on - strand, within Psyr_3426at 4090.541 kb on - strand, within Psyr_3426at 4090.541 kb on - strand, within Psyr_3426at 4090.541 kb on - strand, within Psyr_3426at 4090.541 kb on - strand, within Psyr_3426at 4090.554 kb on + strand, within Psyr_3426at 4090.567 kb on - strand, within Psyr_3426at 4090.578 kb on + strand, within Psyr_3426at 4090.578 kb on + strand, within Psyr_3426at 4090.578 kb on + strand, within Psyr_3426at 4090.705 kb on - strand, within Psyr_3426at 4090.869 kb on + strandat 4090.870 kb on - strandat 4090.918 kb on - strandat 4090.918 kb on - strandat 4090.918 kb on - strandat 4091.097 kb on + strandat 4091.097 kb on + strandat 4091.098 kb on - strandat 4091.142 kb on + strandat 4091.142 kb on + strandat 4091.142 kb on + strandat 4091.143 kb on - strandat 4091.143 kb on - strandat 4091.235 kb on + strandat 4091.235 kb on + strandat 4091.235 kb on + strandat 4091.235 kb on + strandat 4091.236 kb on - strandat 4091.236 kb on - strandat 4091.236 kb on - strandat 4091.245 kb on + strandat 4091.245 kb on + strandat 4091.246 kb on - strandat 4091.470 kb on - strand, within Psyr_3427at 4091.578 kb on + strand, within Psyr_3427at 4091.578 kb on + strand, within Psyr_3427at 4091.578 kb on + strand, within Psyr_3427at 4091.579 kb on - strand, within Psyr_3427at 4091.579 kb on - strand, within Psyr_3427at 4091.621 kb on + strandat 4091.621 kb on + strandat 4091.621 kb on + strandat 4091.622 kb on - strandat 4091.622 kb on - strandat 4091.622 kb on - strandat 4091.796 kb on + strand, within Psyr_3428at 4091.796 kb on + strand, within Psyr_3428at 4091.797 kb on - strand, within Psyr_3428at 4091.960 kb on + strand, within Psyr_3428at 4091.960 kb on + strand, within Psyr_3428at 4091.960 kb on + strand, within Psyr_3428at 4091.960 kb on + strand, within Psyr_3428at 4091.961 kb on - strand, within Psyr_3428at 4091.964 kb on + strand, within Psyr_3428at 4091.964 kb on + strand, within Psyr_3428at 4091.964 kb on + strand, within Psyr_3428at 4091.964 kb on + strand, within Psyr_3428at 4091.964 kb on + strand, within Psyr_3428at 4092.001 kb on - strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strandat 4092.026 kb on + strand, within Psyr_3428at 4092.026 kb on + strand, within Psyr_3428at 4092.027 kb on - strand, within Psyr_3428at 4092.027 kb on - strand, within Psyr_3428at 4092.027 kb on - strand, within Psyr_3428at 4092.027 kb on - strand, within Psyr_3428at 4092.079 kb on + strandat 4092.079 kb on + strandat 4092.079 kb on + strandat 4092.080 kb on - strandat 4092.080 kb on - strandat 4092.080 kb on - strandat 4092.109 kb on + strandat 4092.109 kb on + strandat 4092.110 kb on - strandat 4092.110 kb on - strandat 4092.110 kb on - strandat 4092.110 kb on - strandat 4092.110 kb on - strandat 4092.110 kb on - strandat 4092.174 kb on + strandat 4092.175 kb on - strandat 4092.175 kb on - strandat 4092.393 kb on + strand, within Psyr_3429at 4092.394 kb on - strand, within Psyr_3429

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,090,410 + Psyr_3426 0.26 -0.4
4,090,410 + Psyr_3426 0.26 -0.7
4,090,540 + Psyr_3426 0.50 +0.1
4,090,540 + Psyr_3426 0.50 -0.2
4,090,540 + Psyr_3426 0.50 +0.9
4,090,540 + Psyr_3426 0.50 +0.7
4,090,540 + Psyr_3426 0.50 +0.1
4,090,540 + Psyr_3426 0.50 +0.2
4,090,541 - Psyr_3426 0.50 -0.9
4,090,541 - Psyr_3426 0.50 -0.6
4,090,541 - Psyr_3426 0.50 +0.4
4,090,541 - Psyr_3426 0.50 -1.1
4,090,541 - Psyr_3426 0.50 -0.9
4,090,554 + Psyr_3426 0.52 -2.1
4,090,567 - Psyr_3426 0.55 -0.9
4,090,578 + Psyr_3426 0.57 -0.1
4,090,578 + Psyr_3426 0.57 -0.2
4,090,578 + Psyr_3426 0.57 +0.5
4,090,705 - Psyr_3426 0.80 +0.1
4,090,869 + -0.9
4,090,870 - +1.4
4,090,918 - -2.0
4,090,918 - +0.5
4,090,918 - -0.5
4,091,097 + -1.5
4,091,097 + +1.5
4,091,098 - +0.7
4,091,142 + +0.5
4,091,142 + +0.4
4,091,142 + +0.0
4,091,143 - -0.3
4,091,143 - +0.3
4,091,235 + -1.1
4,091,235 + +0.7
4,091,235 + -1.9
4,091,235 + +1.3
4,091,236 - +0.0
4,091,236 - +0.3
4,091,236 - -0.2
4,091,245 + -0.3
4,091,245 + -0.9
4,091,246 - -0.5
4,091,470 - Psyr_3427 0.59 +0.7
4,091,578 + Psyr_3427 0.86 -3.0
4,091,578 + Psyr_3427 0.86 -2.5
4,091,578 + Psyr_3427 0.86 -0.9
4,091,579 - Psyr_3427 0.86 -0.3
4,091,579 - Psyr_3427 0.86 -1.3
4,091,621 + -1.6
4,091,621 + -2.9
4,091,621 + -1.1
4,091,622 - -0.2
4,091,622 - -0.3
4,091,622 - -0.5
4,091,796 + Psyr_3428 0.33 -0.1
4,091,796 + Psyr_3428 0.33 +0.7
4,091,797 - Psyr_3428 0.34 -0.2
4,091,960 + Psyr_3428 0.68 -2.8
4,091,960 + Psyr_3428 0.68 +1.1
4,091,960 + Psyr_3428 0.68 +1.9
4,091,960 + Psyr_3428 0.68 -0.3
4,091,961 - Psyr_3428 0.68 +0.3
4,091,964 + Psyr_3428 0.68 -2.1
4,091,964 + Psyr_3428 0.68 -0.2
4,091,964 + Psyr_3428 0.68 -1.6
4,091,964 + Psyr_3428 0.68 -1.3
4,091,964 + Psyr_3428 0.68 -0.6
4,092,001 - Psyr_3428 0.76 +0.2
4,092,026 + Psyr_3428 0.81 -1.6
4,092,026 + Psyr_3428 0.81 -0.9
4,092,026 + Psyr_3428 0.81 +0.7
4,092,026 + Psyr_3428 0.81 -1.5
4,092,026 + Psyr_3428 0.81 -0.1
4,092,026 + -1.1
4,092,026 + Psyr_3428 0.81 +0.7
4,092,026 + Psyr_3428 0.81 +0.0
4,092,027 - Psyr_3428 0.81 +0.5
4,092,027 - Psyr_3428 0.81 +1.7
4,092,027 - Psyr_3428 0.81 +0.3
4,092,027 - Psyr_3428 0.81 +0.6
4,092,079 + -1.9
4,092,079 + -0.2
4,092,079 + -2.6
4,092,080 - +1.7
4,092,080 - +0.3
4,092,080 - +1.1
4,092,109 + -1.1
4,092,109 + -3.1
4,092,110 - +0.1
4,092,110 - +1.0
4,092,110 - +0.7
4,092,110 - -0.2
4,092,110 - +1.0
4,092,110 - +0.0
4,092,174 + -0.3
4,092,175 - -1.0
4,092,175 - +1.7
4,092,393 + Psyr_3429 0.24 -0.6
4,092,394 - Psyr_3429 0.24 -0.9

Or see this region's nucleotide sequence