Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3376 and Psyr_3377 are separated by 539 nucleotides Psyr_3377 and Psyr_3378 overlap by 4 nucleotides
Psyr_3376: Psyr_3376 - lyase, putative, at 4,035,018 to 4,035,686
_3376
Psyr_3377: Psyr_3377 - transcriptional regulator, MarR family, at 4,036,226 to 4,036,678
_3377
Psyr_3378: Psyr_3378 - Fusaric acid resistance protein conserved region, at 4,036,675 to 4,038,762
_3378
Position (kb) 4036
4037 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4035.334 kb on + strand, within Psyr_3376 at 4035.334 kb on + strand, within Psyr_3376 at 4035.335 kb on - strand, within Psyr_3376 at 4035.335 kb on - strand, within Psyr_3376 at 4035.340 kb on + strand, within Psyr_3376 at 4035.341 kb on - strand, within Psyr_3376 at 4035.341 kb on - strand, within Psyr_3376 at 4035.373 kb on + strand, within Psyr_3376 at 4035.373 kb on + strand, within Psyr_3376 at 4035.374 kb on - strand, within Psyr_3376 at 4035.374 kb on - strand, within Psyr_3376 at 4035.589 kb on + strand, within Psyr_3376 at 4035.589 kb on + strand, within Psyr_3376 at 4035.609 kb on + strand, within Psyr_3376 at 4035.671 kb on + strand at 4035.952 kb on + strand at 4035.952 kb on + strand at 4035.953 kb on - strand at 4035.953 kb on - strand at 4036.006 kb on + strand at 4036.018 kb on - strand at 4036.061 kb on - strand at 4036.140 kb on + strand at 4036.140 kb on + strand at 4036.204 kb on - strand at 4036.319 kb on + strand, within Psyr_3377 at 4036.319 kb on + strand, within Psyr_3377 at 4036.319 kb on + strand, within Psyr_3377 at 4036.320 kb on - strand, within Psyr_3377 at 4036.320 kb on - strand, within Psyr_3377 at 4036.629 kb on + strand, within Psyr_3377 at 4036.720 kb on + strand at 4036.721 kb on - strand at 4036.759 kb on + strand at 4036.759 kb on + strand at 4036.759 kb on + strand at 4036.759 kb on + strand at 4036.759 kb on + strand at 4036.759 kb on + strand at 4036.760 kb on - strand at 4036.760 kb on - strand at 4036.760 kb on - strand at 4036.760 kb on - strand at 4036.813 kb on + strand at 4036.813 kb on + strand at 4036.813 kb on + strand at 4036.814 kb on - strand at 4036.814 kb on - strand at 4036.814 kb on - strand at 4037.011 kb on + strand, within Psyr_3378 at 4037.011 kb on + strand, within Psyr_3378 at 4037.033 kb on - strand, within Psyr_3378 at 4037.224 kb on + strand, within Psyr_3378 at 4037.224 kb on + strand, within Psyr_3378 at 4037.225 kb on - strand, within Psyr_3378 at 4037.225 kb on - strand, within Psyr_3378 at 4037.238 kb on + strand, within Psyr_3378
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,035,334 + Psyr_3376 0.47 +0.4 4,035,334 + Psyr_3376 0.47 +0.7 4,035,335 - Psyr_3376 0.47 -0.5 4,035,335 - Psyr_3376 0.47 +0.3 4,035,340 + Psyr_3376 0.48 -1.5 4,035,341 - Psyr_3376 0.48 -0.4 4,035,341 - Psyr_3376 0.48 +1.1 4,035,373 + Psyr_3376 0.53 +0.9 4,035,373 + Psyr_3376 0.53 -1.0 4,035,374 - Psyr_3376 0.53 +1.7 4,035,374 - Psyr_3376 0.53 +0.1 4,035,589 + Psyr_3376 0.85 -0.6 4,035,589 + Psyr_3376 0.85 -0.2 4,035,609 + Psyr_3376 0.88 -0.4 4,035,671 + +1.3 4,035,952 + -0.7 4,035,952 + -0.5 4,035,953 - +0.4 4,035,953 - +0.1 4,036,006 + -0.5 4,036,018 - -1.3 4,036,061 - +0.9 4,036,140 + -1.9 4,036,140 + -2.5 4,036,204 - +0.6 4,036,319 + Psyr_3377 0.21 -1.3 4,036,319 + Psyr_3377 0.21 +1.4 4,036,319 + Psyr_3377 0.21 -1.5 4,036,320 - Psyr_3377 0.21 -0.6 4,036,320 - Psyr_3377 0.21 -1.3 4,036,629 + Psyr_3377 0.89 +1.1 4,036,720 + -1.4 4,036,721 - -0.1 4,036,759 + +0.7 4,036,759 + -0.6 4,036,759 + -2.6 4,036,759 + -2.2 4,036,759 + -0.9 4,036,759 + +0.9 4,036,760 - +0.0 4,036,760 - +0.2 4,036,760 - -0.6 4,036,760 - +0.5 4,036,813 + -0.1 4,036,813 + +0.4 4,036,813 + +0.3 4,036,814 - -1.3 4,036,814 - +0.1 4,036,814 - +0.7 4,037,011 + Psyr_3378 0.16 +0.5 4,037,011 + Psyr_3378 0.16 +0.1 4,037,033 - Psyr_3378 0.17 +0.7 4,037,224 + Psyr_3378 0.26 +0.2 4,037,224 + Psyr_3378 0.26 -1.1 4,037,225 - Psyr_3378 0.26 -0.0 4,037,225 - Psyr_3378 0.26 +2.3 4,037,238 + Psyr_3378 0.27 -1.4
Or see this region's nucleotide sequence