Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3342

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,996,735	+		Psyr_3340	0.85	-0.8
3,996,735	+		Psyr_3340	0.85	+0.3
3,996,735	+		Psyr_3340	0.85	+0.7
3,996,735	+		Psyr_3340	0.85	+1.7
3,996,735	+		Psyr_3340	0.85	-0.9
3,996,736	-		Psyr_3340	0.85	+0.8
3,996,736	-		Psyr_3340	0.85	+0.8
3,996,736	-		Psyr_3340	0.85	+0.1
3,996,941	+				+1.0
3,996,941	+				+0.2
3,996,941	+				-0.2
3,996,942	-				+0.9
3,996,967	-				+0.7
3,997,053	+				+0.0
3,997,053	+				-2.9
3,997,053	+				-0.3
3,997,053	+				-0.3
3,997,054	-				-0.1
3,997,054	-				-0.3
3,997,054	-				-0.9
3,997,054	-				-0.3
3,997,054	-				-0.5
3,997,054	-				-1.5
3,997,065	+				-1.0
3,997,066	-				+0.7
3,997,106	+				-1.4
3,997,106	+				+0.9
3,997,107	-				-0.2
3,997,146	+				+0.2
3,997,201	+				+0.1
3,997,202	-				+0.1
3,997,215	+		Psyr_3341	0.11	+0.2
3,997,250	+		Psyr_3341	0.24	-2.6
3,997,332	-		Psyr_3341	0.53	-1.6
3,997,332	-		Psyr_3341	0.53	-0.3
3,997,334	-		Psyr_3341	0.54	-1.2
3,997,334	-		Psyr_3341	0.54	-2.8
3,997,365	+		Psyr_3341	0.65	+0.0
3,997,366	-		Psyr_3341	0.66	-0.9
3,997,393	-		Psyr_3341	0.75	-1.2
3,997,431	+		Psyr_3341	0.89	-0.2
3,997,622	-				-0.2
3,997,671	+				+1.4
3,997,671	+				-1.8
3,997,672	-				-0.2
3,997,674	+				-2.1
3,997,674	+				-0.9
3,997,675	-				+0.2
3,997,809	-		Psyr_3342	0.58	-0.3
3,997,809	-		Psyr_3342	0.58	-0.6
3,997,840	+		Psyr_3342	0.70	-1.2
3,997,892	+		Psyr_3342	0.90	-3.3
3,997,924	+				-2.8
3,997,925	-				+0.5
3,997,925	-				+0.8
3,997,932	+				-0.8
3,997,932	+				-1.3
3,997,932	+				+0.1
3,997,932	+				-0.7
3,997,932	+				-1.7
3,997,933	-				-1.8
3,997,940	+				+0.7
3,997,941	-				-0.5
3,997,941	-				-0.3
3,997,941	-				+1.0
3,997,941	-				-1.7
3,997,978	+				-0.1
3,998,038	-				-0.2
3,998,059	+				-1.9
3,998,060	-				+1.9
3,998,060	-				+1.1
3,998,060	-				+0.3
3,998,115	-				-0.5
3,998,128	-				-1.5
3,998,229	+				+0.7
3,998,325	-				-0.8
3,998,334	+				-0.1
3,998,334	+				+0.2
3,998,334	+				+0.1
3,998,334	+				-0.5
3,998,334	+				+0.2
3,998,334	+				-1.7
3,998,334	+				+1.7
3,998,334	+				-0.7
3,998,334	+				+0.7
3,998,335	-				-0.0
3,998,335	-				+0.7
3,998,335	-				-1.1
3,998,335	-				+0.7
3,998,335	-				+0.1
3,998,639	-		Psyr_3343	0.63	-0.3
3,998,720	+		Psyr_3343	0.80	+0.7
3,998,741	+		Psyr_3343	0.84	+0.5
3,998,741	+		Psyr_3343	0.84	-0.5
3,998,741	+		Psyr_3343	0.84	+0.4
3,998,741	+		Psyr_3343	0.84	-1.2
3,998,741	+		Psyr_3343	0.84	-1.5
3,998,741	+		Psyr_3343	0.84	+0.7
3,998,741	+		Psyr_3343	0.84	+0.1
3,998,741	+		Psyr_3343	0.84	+0.4
3,998,741	+		Psyr_3343	0.84	+1.2
3,998,741	+		Psyr_3343	0.84	+0.4
3,998,741	+		Psyr_3343	0.84	-1.7
3,998,741	+		Psyr_3343	0.84	+0.7
3,998,741	+		Psyr_3343	0.84	-0.9
3,998,742	-		Psyr_3343	0.84	+0.8
3,998,742	-		Psyr_3343	0.84	+0.9
3,998,742	-		Psyr_3343	0.84	+1.0
3,998,742	-		Psyr_3343	0.84	-0.6
3,998,742	-		Psyr_3343	0.84	-0.8
3,998,742	-		Psyr_3343	0.84	-1.1
3,998,742	-		Psyr_3343	0.84	+1.1
3,998,742	-		Psyr_3343	0.84	+1.0
3,998,742	-		Psyr_3343	0.84	-0.3
3,998,742	-		Psyr_3343	0.84	-0.9
3,998,821	-				+1.5
3,998,859	+				-0.8
3,998,860	-				+0.2
3,998,861	+				-0.2
3,998,861	+				+1.1
3,998,861	+				-0.6
3,998,861	+				-0.2
3,998,861	+				+1.5
3,998,862	-				+0.7
3,998,862	-				+0.2
3,998,862	-				+0.7
3,998,862	-				+1.3
3,998,862	-				-0.9
3,998,862	-				+0.4