Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3327

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,978,241	-		Psyr_3326	0.34	-0.2
3,978,241	-		Psyr_3326	0.34	-1.3
3,978,250	+		Psyr_3326	0.35	+1.7
3,978,279	+		Psyr_3326	0.37	-0.9
3,978,279	+		Psyr_3326	0.37	-1.0
3,978,280	-		Psyr_3326	0.37	-2.3
3,978,280	-		Psyr_3326	0.37	+1.3
3,978,280	-		Psyr_3326	0.37	+0.8
3,978,280	-		Psyr_3326	0.37	-1.7
3,978,285	+		Psyr_3326	0.38	-0.5
3,978,285	+		Psyr_3326	0.38	-0.2
3,978,508	-		Psyr_3326	0.55	-0.4
3,978,696	+		Psyr_3326	0.69	+0.1
3,978,696	+		Psyr_3326	0.69	+0.7
3,978,697	-		Psyr_3326	0.69	+0.0
3,978,913	+		Psyr_3326	0.86	+0.1
3,978,914	-		Psyr_3326	0.86	+0.1
3,978,914	-		Psyr_3326	0.86	-0.2
3,978,914	-		Psyr_3326	0.86	+0.1
3,978,970	-				-1.3
3,979,147	+				+0.4
3,979,148	-				-0.2
3,979,152	+				+0.7
3,979,176	+				-0.6
3,979,176	+				+1.0
3,979,176	+				-0.3
3,979,203	+				+1.0
3,979,203	+				-0.3
3,979,203	+				-0.9
3,979,204	-				+0.0
3,979,204	-				+0.5
3,979,204	-				+0.8
3,979,616	+		Psyr_3327	0.47	+1.5
3,979,616	+		Psyr_3327	0.47	+0.5
3,979,616	+		Psyr_3327	0.47	+0.7
3,979,616	+		Psyr_3327	0.47	-0.1
3,979,617	-		Psyr_3327	0.47	+1.8
3,979,617	-		Psyr_3327	0.47	-0.1
3,979,617	-		Psyr_3327	0.47	+0.4
3,979,617	-		Psyr_3327	0.47	-0.4
3,979,617	-		Psyr_3327	0.47	+0.5
3,979,617	-		Psyr_3327	0.47	-0.8
3,979,617	-		Psyr_3327	0.47	+1.4
3,979,617	-		Psyr_3327	0.47	+1.0
3,979,617	-		Psyr_3327	0.47	+0.1
3,979,617	-		Psyr_3327	0.47	-0.3
3,979,617	-		Psyr_3327	0.47	-0.9
3,980,070	-				+0.3
3,980,134	+				-0.3
3,980,253	+		Psyr_3328	0.13	-0.2
3,980,253	+		Psyr_3328	0.13	-1.5
3,980,254	-		Psyr_3328	0.13	-0.9
3,980,255	+		Psyr_3328	0.13	+0.3
3,980,255	+		Psyr_3328	0.13	-1.7
3,980,255	+		Psyr_3328	0.13	+0.3
3,980,255	+				+1.7
3,980,255	+		Psyr_3328	0.13	-0.5
3,980,255	+		Psyr_3328	0.13	-3.4
3,980,255	+		Psyr_3328	0.13	+0.2
3,980,255	+		Psyr_3328	0.13	-0.7
3,980,255	+		Psyr_3328	0.13	-0.1
3,980,255	+		Psyr_3328	0.13	+0.1
3,980,255	+		Psyr_3328	0.13	-0.2
3,980,255	+		Psyr_3328	0.13	+0.7
3,980,256	-		Psyr_3328	0.13	+0.7
3,980,256	-		Psyr_3328	0.13	-0.7
3,980,256	-		Psyr_3328	0.13	+0.2
3,980,256	-		Psyr_3328	0.13	+0.2
3,980,256	-		Psyr_3328	0.13	-0.2
3,980,256	-		Psyr_3328	0.13	+0.2
3,980,256	-		Psyr_3328	0.13	+2.7
3,980,256	-		Psyr_3328	0.13	-0.8
3,980,256	-		Psyr_3328	0.13	-3.2
3,980,256	-		Psyr_3328	0.13	+0.2
3,980,256	-		Psyr_3328	0.13	+0.1
3,980,256	-		Psyr_3328	0.13	-0.3
3,980,256	-		Psyr_3328	0.13	+0.7
3,980,406	+		Psyr_3328	0.23	-1.0
3,980,407	-		Psyr_3328	0.23	+0.3
3,980,443	+		Psyr_3328	0.25	-0.2
3,980,443	+		Psyr_3328	0.25	-0.7
3,980,444	-		Psyr_3328	0.25	-2.3
3,980,444	-		Psyr_3328	0.25	-0.2
3,980,455	+		Psyr_3328	0.26	-2.4
3,980,456	-		Psyr_3328	0.26	-0.3
3,980,456	-		Psyr_3328	0.26	+0.7
3,980,487	-		Psyr_3328	0.28	-0.2
3,980,815	+		Psyr_3328	0.47	-1.3
3,980,815	+		Psyr_3328	0.47	-0.3
3,980,815	+		Psyr_3328	0.47	-0.8
3,980,815	+		Psyr_3328	0.47	-0.7
3,980,815	+		Psyr_3328	0.47	+0.7
3,980,815	+		Psyr_3328	0.47	-2.2
3,980,815	+		Psyr_3328	0.47	+0.5
3,980,815	+		Psyr_3328	0.47	-0.2
3,980,815	+		Psyr_3328	0.47	-0.1
3,980,815	+		Psyr_3328	0.47	+2.7
3,980,815	+		Psyr_3328	0.47	+1.2
3,980,815	+		Psyr_3328	0.47	-0.9
3,980,815	+		Psyr_3328	0.47	+0.4
3,980,816	-		Psyr_3328	0.47	+0.7
3,980,816	-		Psyr_3328	0.47	-0.9
3,980,816	-		Psyr_3328	0.47	-1.3
3,980,816	-		Psyr_3328	0.47	-0.0
3,980,816	-		Psyr_3328	0.47	+1.7
3,980,816	-		Psyr_3328	0.47	-1.7
3,980,816	-		Psyr_3328	0.47	-2.2
3,980,816	-		Psyr_3328	0.47	+1.0
3,980,816	-		Psyr_3328	0.47	-0.9
3,980,816	-		Psyr_3328	0.47	-0.5
3,980,816	-		Psyr_3328	0.47	+1.4
3,980,816	-		Psyr_3328	0.47	-0.3
3,980,816	-		Psyr_3328	0.47	-0.3
3,980,816	-		Psyr_3328	0.47	+0.6
3,980,873	-		Psyr_3328	0.51	+0.1
3,980,873	-		Psyr_3328	0.51	-0.6
3,980,997	+		Psyr_3328	0.58	+0.3
3,980,997	+		Psyr_3328	0.58	+0.3
3,980,998	-		Psyr_3328	0.59	+0.7
3,980,998	-		Psyr_3328	0.59	-0.9
3,980,998	-		Psyr_3328	0.59	-0.3
3,981,029	-		Psyr_3328	0.60	-0.1
3,981,029	-		Psyr_3328	0.60	-1.1
3,981,029	-		Psyr_3328	0.60	+0.0