Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3287

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,931,606	+				-2.9
3,931,606	+				+0.9
3,931,776	+		Psyr_3285	0.80	-0.0
3,931,815	+				+0.1
3,931,825	+				-0.6
3,931,825	+				-0.4
3,931,831	+				-2.4
3,931,831	+				-2.3
3,931,832	-				+0.5
3,931,832	-				-2.4
3,931,832	-				-0.4
3,931,854	+				-0.6
3,931,855	-				+0.6
3,931,855	-				-1.0
3,931,872	+				-1.7
3,931,873	-				+0.9
3,931,873	-				-0.1
3,932,006	+		Psyr_3286	0.19	+1.0
3,932,007	-		Psyr_3286	0.19	+1.4
3,932,007	-		Psyr_3286	0.19	-0.0
3,932,007	-		Psyr_3286	0.19	+0.1
3,932,061	+		Psyr_3286	0.27	+0.3
3,932,061	+		Psyr_3286	0.27	-0.5
3,932,061	+		Psyr_3286	0.27	-2.2
3,932,061	+		Psyr_3286	0.27	+0.3
3,932,061	+		Psyr_3286	0.27	-0.4
3,932,061	+		Psyr_3286	0.27	-1.4
3,932,061	+		Psyr_3286	0.27	+0.0
3,932,062	-		Psyr_3286	0.28	-0.7
3,932,062	-		Psyr_3286	0.28	+1.8
3,932,062	-		Psyr_3286	0.28	+1.0
3,932,062	-		Psyr_3286	0.28	-1.1
3,932,062	-		Psyr_3286	0.28	-1.6
3,932,062	-		Psyr_3286	0.28	-0.0
3,932,062	-		Psyr_3286	0.28	-1.9
3,932,073	+		Psyr_3286	0.29	-1.6
3,932,073	+		Psyr_3286	0.29	-1.5
3,932,085	-		Psyr_3286	0.31	-0.6
3,932,085	-		Psyr_3286	0.31	-0.4
3,932,085	-		Psyr_3286	0.31	-1.1
3,932,123	+		Psyr_3286	0.37	+0.3
3,932,218	-		Psyr_3286	0.52	+0.6
3,932,259	+		Psyr_3286	0.58	-1.2
3,932,259	+		Psyr_3286	0.58	+0.8
3,932,260	-		Psyr_3286	0.59	-0.7
3,932,260	-		Psyr_3286	0.59	-1.2
3,932,260	-		Psyr_3286	0.59	+0.1
3,932,260	-		Psyr_3286	0.59	-1.1
3,932,391	+		Psyr_3286	0.79	+0.3
3,932,391	+		Psyr_3286	0.79	-0.8
3,932,391	+		Psyr_3286	0.79	+1.1
3,932,391	+		Psyr_3286	0.79	+0.0
3,932,391	+		Psyr_3286	0.79	-1.0
3,932,392	-		Psyr_3286	0.79	-0.4
3,932,392	-		Psyr_3286	0.79	-0.2
3,932,392	-		Psyr_3286	0.79	-0.3
3,932,392	-		Psyr_3286	0.79	+0.4
3,932,392	-		Psyr_3286	0.79	+0.2
3,932,392	-		Psyr_3286	0.79	-0.5
3,932,434	-		Psyr_3286	0.86	+0.6
3,932,446	-		Psyr_3286	0.88	-0.9
3,932,700	+				-0.4
3,932,820	-		Psyr_3287	0.11	-0.4
3,932,823	+		Psyr_3287	0.11	-1.4
3,932,823	+		Psyr_3287	0.11	-1.0
3,932,824	-		Psyr_3287	0.11	+1.2
3,932,824	-		Psyr_3287	0.11	-0.1
3,932,824	-		Psyr_3287	0.11	-1.4
3,932,824	-		Psyr_3287	0.11	-1.0
3,932,912	-				+1.6
3,935,167	-				+0.8
3,935,192	-				-0.5
3,935,204	-				+0.0
3,935,204	-				+0.3
3,935,204	-				+0.3
3,935,204	-				+0.3
3,935,204	-				+0.2
3,935,204	-				-0.8
3,935,204	-				+0.0
3,935,206	-				+0.2
3,935,206	-				-0.2
3,935,206	-				-0.7
3,935,206	-				-0.2
3,935,206	-				-1.1
3,935,206	-				+0.3
3,935,206	-				+0.8
3,935,206	-				-0.4
3,935,206	-				+1.6
3,935,206	-				-1.4
3,935,206	-				-2.8
3,935,206	-				-0.4
3,935,208	-				+0.6
3,935,208	-				-1.0
3,935,208	-				-0.7
3,935,208	-				+1.0
3,935,208	-				+0.5
3,935,208	-				-2.0
3,935,208	-				-2.0
3,935,208	-				+1.2
3,935,208	-				+0.9
3,935,208	-				-0.1
3,935,208	-				-0.1
3,935,208	-				+0.6
3,935,208	-				+0.3
3,935,208	-				-1.0
3,935,208	-				+0.2
3,935,208	-				-0.6
3,935,208	-				-0.0
3,935,208	-				-0.7
3,935,208	-				-1.0
3,935,208	-				+0.3
3,935,210	-				+0.3
3,935,210	-				-0.6
3,935,210	-				+0.6
3,935,210	-				-0.4
3,935,447	+		Psyr_3288	0.80	-0.3
3,935,462	+		Psyr_3288	0.86	+0.9
3,935,462	+		Psyr_3288	0.86	+1.0
3,935,462	+		Psyr_3288	0.86	+0.3
3,935,463	-		Psyr_3288	0.87	-0.1
3,935,471	+				-0.2
3,935,509	+				+0.3
3,935,509	+				+0.9
3,935,510	-				+0.6
3,935,510	-				-0.6
3,935,640	+				-0.8
3,935,640	+				-0.4
3,935,640	+				-1.2
3,935,640	+				+0.2
3,935,640	+				-2.0
3,935,865	+		Psyr_3289	0.23	-3.0
3,935,866	-		Psyr_3289	0.23	+0.1
3,936,061	+		Psyr_3289	0.40	+0.6
3,936,061	+		Psyr_3289	0.40	+1.2
3,936,061	+		Psyr_3289	0.40	+0.6