Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3260

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,902,087	-		Psyr_3258	0.38	+1.6
3,902,253	-		Psyr_3258	0.74	+0.3
3,902,254	+		Psyr_3258	0.74	+1.3
3,902,254	+		Psyr_3258	0.74	+0.2
3,902,254	+		Psyr_3258	0.74	+0.0
3,902,255	-		Psyr_3258	0.74	-0.4
3,902,255	-		Psyr_3258	0.74	-0.1
3,902,255	-		Psyr_3258	0.74	-0.4
3,902,255	-		Psyr_3258	0.74	+0.6
3,902,255	-		Psyr_3258	0.74	-0.4
3,902,255	-		Psyr_3258	0.74	+0.3
3,902,255	-		Psyr_3258	0.74	-1.4
3,902,255	-		Psyr_3258	0.74	+0.4
3,902,285	-		Psyr_3258	0.81	+0.9
3,902,363	+				+0.0
3,902,364	-				-1.0
3,902,364	-				-0.4
3,902,367	+				-0.2
3,902,368	-				-1.0
3,902,368	-				-0.1
3,902,368	-				-1.8
3,902,368	-				+0.6
3,902,378	+				+0.5
3,902,379	-				-1.6
3,902,443	+				-0.8
3,902,444	-				-0.2
3,902,562	+				+0.6
3,902,564	+				-0.5
3,902,564	+				-0.1
3,902,564	+				+0.4
3,902,565	-				-1.6
3,902,565	-				-1.7
3,902,565	-				+1.9
3,902,565	-				-0.7
3,902,565	-				-1.6
3,902,566	+				-0.1
3,902,567	-				+1.6
3,902,567	-				+0.2
3,902,698	+				+0.5
3,902,698	+				-1.5
3,902,698	+				+1.3
3,902,698	+				-0.7
3,902,698	+				-0.8
3,902,698	+				-1.4
3,902,698	+				-0.7
3,902,698	+				-0.3
3,902,698	+				-0.4
3,902,698	+				+0.0
3,902,699	-				+0.8
3,902,699	-				+0.6
3,902,699	-				-0.4
3,902,699	-				+1.2
3,902,699	-				+0.4
3,902,700	+				+0.0
3,902,776	-				-0.2
3,902,830	+				-2.0
3,902,830	+				-0.1
3,902,830	+				-0.2
3,902,830	+				-1.7
3,902,831	-				+0.2
3,902,831	-				+0.0
3,902,831	-				-0.4
3,902,831	-				+1.1
3,902,831	-				+0.6
3,902,831	-				-2.2
3,902,836	+				-2.0
3,902,837	-				-0.1
3,902,837	-				+1.0
3,902,837	-				-0.4
3,902,837	-				-0.7
3,902,837	-				+0.5
3,903,079	+				-0.4
3,903,080	-				+0.1
3,903,214	+				-1.1
3,903,215	-				-0.4
3,903,215	-				+0.2
3,903,215	-				-0.8
3,903,256	+		Psyr_3260	0.12	-1.0
3,903,256	+				-1.4
3,903,257	-		Psyr_3260	0.12	-0.9
3,903,274	+		Psyr_3260	0.13	-2.0
3,903,452	+		Psyr_3260	0.25	+0.0
3,903,452	+		Psyr_3260	0.25	+0.8
3,903,452	+		Psyr_3260	0.25	-2.2
3,903,453	-		Psyr_3260	0.25	-1.2
3,903,453	-		Psyr_3260	0.25	-0.2
3,903,453	-		Psyr_3260	0.25	+1.3
3,903,453	-		Psyr_3260	0.25	-0.4
3,903,453	-		Psyr_3260	0.25	+0.6
3,903,453	-		Psyr_3260	0.25	-0.7
3,903,453	-		Psyr_3260	0.25	-0.5
3,903,456	+		Psyr_3260	0.25	-0.2
3,903,456	+		Psyr_3260	0.25	-0.8
3,903,456	+		Psyr_3260	0.25	-1.0
3,903,456	+		Psyr_3260	0.25	-1.2
3,903,456	+		Psyr_3260	0.25	-1.6
3,903,456	+		Psyr_3260	0.25	-0.5
3,903,457	-		Psyr_3260	0.26	-0.6
3,903,567	+		Psyr_3260	0.33	-0.1
3,903,567	+		Psyr_3260	0.33	-0.7
3,903,654	+		Psyr_3260	0.39	+1.9
3,903,655	-		Psyr_3260	0.39	-0.1
3,903,680	-		Psyr_3260	0.41	-0.4
3,903,823	+				-1.6
3,904,245	+		Psyr_3260	0.79	-0.4
3,904,246	-		Psyr_3260	0.79	-0.4
3,904,249	+		Psyr_3260	0.79	+0.0
3,904,249	+		Psyr_3260	0.79	+0.5
3,904,249	+		Psyr_3260	0.79	+1.9
3,904,249	+		Psyr_3260	0.79	-1.7
3,904,250	-		Psyr_3260	0.79	+0.9
3,904,261	+		Psyr_3260	0.80	+0.9
3,904,261	+		Psyr_3260	0.80	-0.9
3,904,261	+		Psyr_3260	0.80	-1.4
3,904,262	-		Psyr_3260	0.80	+1.0
3,904,262	-		Psyr_3260	0.80	-1.4
3,904,262	-		Psyr_3260	0.80	+1.3
3,904,262	-				-1.2
3,904,329	+		Psyr_3260	0.84	+1.3
3,904,329	+		Psyr_3260	0.84	-1.0
3,904,330	-		Psyr_3260	0.84	+0.2
3,904,331	+		Psyr_3260	0.84	-0.2
3,904,332	-		Psyr_3260	0.84	-0.7
3,904,351	+		Psyr_3260	0.86	-2.0
3,904,352	-		Psyr_3260	0.86	-0.3
3,904,448	+				-1.7
3,904,461	-				+1.7
3,904,461	-				-0.2
3,904,488	+				+0.0
3,904,489	-				-0.0
3,904,605	+				-0.4
3,904,716	+				-0.4
3,904,737	+				+2.6
3,904,793	+				+0.6
3,904,794	-				-2.2
3,904,840	-				+1.0
3,904,951	+				-0.7
3,904,951	+				+0.6
3,904,952	-				+0.3
3,904,952	-				-1.1
3,905,127	+		Psyr_3261	0.18	-1.0
3,905,127	+		Psyr_3261	0.18	-2.2
3,905,128	-		Psyr_3261	0.18	+1.2
3,905,128	-		Psyr_3261	0.18	+0.6
3,905,175	+		Psyr_3261	0.21	-0.3
3,905,225	+		Psyr_3261	0.24	+0.6
3,905,226	-		Psyr_3261	0.24	+0.6
3,905,226	-		Psyr_3261	0.24	+2.6
3,905,242	+		Psyr_3261	0.25	+0.0
3,905,243	-		Psyr_3261	0.25	-0.4
3,905,243	-		Psyr_3261	0.25	-1.0
3,905,243	-		Psyr_3261	0.25	-1.0
3,905,243	-		Psyr_3261	0.25	-0.6
3,905,246	+		Psyr_3261	0.25	-0.8
3,905,247	-		Psyr_3261	0.25	+0.3
3,905,341	+		Psyr_3261	0.31	+1.5
3,905,342	-		Psyr_3261	0.31	-0.9
3,905,342	-		Psyr_3261	0.31	+0.5
3,905,342	-		Psyr_3261	0.31	-3.1
3,905,342	-		Psyr_3261	0.31	-0.4
3,905,356	+		Psyr_3261	0.32	+0.0
3,905,357	-		Psyr_3261	0.32	-1.0
3,905,357	-		Psyr_3261	0.32	-0.9
3,905,357	-		Psyr_3261	0.32	+0.3
3,905,477	+		Psyr_3261	0.39	-1.3
3,905,478	-		Psyr_3261	0.39	-0.2