Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3192 and Psyr_3193 are separated by 60 nucleotides Psyr_3193 and Psyr_3194 overlap by 8 nucleotides Psyr_3194 and Psyr_3195 are separated by 186 nucleotides
Psyr_3192: Psyr_3192 - Adenylosuccinate lyase, at 3,821,398 to 3,822,816
_3192
Psyr_3193: Psyr_3193 - Transcription factor jumonji, jmjC, at 3,822,877 to 3,824,043
_3193
Psyr_3194: Psyr_3194 - GCN5-related N-acetyltransferase, at 3,824,036 to 3,824,458
_3194
Psyr_3195: Psyr_3195 - NolW-like protein, at 3,824,645 to 3,825,388
_3195
Position (kb) 3822
3823
3824
3825 Strain fitness (log2 ratio) -2
-1
0
1 at 3823.288 kb on + strand, within Psyr_3193 at 3823.288 kb on + strand, within Psyr_3193 at 3823.288 kb on + strand, within Psyr_3193 at 3823.289 kb on - strand, within Psyr_3193 at 3823.289 kb on - strand, within Psyr_3193 at 3823.444 kb on + strand, within Psyr_3193 at 3823.499 kb on - strand, within Psyr_3193 at 3824.042 kb on - strand at 3824.042 kb on - strand at 3824.042 kb on - strand at 3824.052 kb on + strand at 3824.052 kb on + strand at 3824.053 kb on - strand at 3824.053 kb on - strand at 3824.053 kb on - strand at 3824.053 kb on - strand at 3824.053 kb on - strand at 3824.186 kb on + strand, within Psyr_3194 at 3824.375 kb on + strand, within Psyr_3194 at 3824.440 kb on + strand at 3824.493 kb on - strand at 3824.493 kb on - strand at 3824.496 kb on + strand at 3824.496 kb on + strand at 3824.497 kb on - strand at 3824.497 kb on - strand at 3824.653 kb on - strand at 3824.741 kb on + strand, within Psyr_3195
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 3,823,288 + Psyr_3193 0.35 +0.6 3,823,288 + Psyr_3193 0.35 -1.4 3,823,288 + Psyr_3193 0.35 -0.4 3,823,289 - Psyr_3193 0.35 +0.6 3,823,289 - Psyr_3193 0.35 -1.0 3,823,444 + Psyr_3193 0.49 +0.6 3,823,499 - Psyr_3193 0.53 -2.6 3,824,042 - +0.6 3,824,042 - -0.4 3,824,042 - -1.7 3,824,052 + -0.4 3,824,052 + -0.2 3,824,053 - -0.7 3,824,053 - +1.3 3,824,053 - +0.2 3,824,053 - +0.0 3,824,053 - +0.6 3,824,186 + Psyr_3194 0.35 -0.4 3,824,375 + Psyr_3194 0.80 -0.4 3,824,440 + -0.2 3,824,493 - -1.2 3,824,493 - -0.4 3,824,496 + +0.1 3,824,496 + +0.3 3,824,497 - +0.6 3,824,497 - -0.1 3,824,653 - -0.2 3,824,741 + Psyr_3195 0.13 -2.0
Or see this region's nucleotide sequence