Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3152

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,776,266	+		Psyr_3151	0.64	+0.1
3,776,412	-		Psyr_3151	0.72	-0.2
3,776,484	-		Psyr_3151	0.76	+0.6
3,776,722	+		Psyr_3151	0.90	+1.5
3,776,734	-				+0.5
3,776,904	+				-0.3
3,776,904	+				-0.7
3,776,904	+				+0.3
3,776,904	+				-0.1
3,776,904	+				-0.5
3,776,904	+				+1.3
3,776,904	+				+0.6
3,776,904	+				-0.8
3,776,904	+				-2.0
3,776,904	+				+0.4
3,776,904	+				+0.2
3,776,905	-				-0.6
3,776,905	-				-0.7
3,776,905	-				+0.7
3,776,905	-				-0.5
3,776,905	-				-0.2
3,776,905	-				+0.6
3,776,905	-				-1.0
3,776,905	-				-1.0
3,776,905	-				+0.3
3,776,905	-				+0.2
3,776,905	-				-1.7
3,776,905	-				+1.8
3,776,905	-				-0.8
3,776,905	-				+0.6
3,776,905	-				+0.6
3,776,907	+				+0.4
3,776,907	+				+0.5
3,776,907	+				-0.6
3,776,907	+				-0.1
3,776,907	+				+0.4
3,776,907	+				+0.2
3,776,908	-				-1.3
3,776,908	-				+0.4
3,776,908	-				-1.4
3,776,908	-				-2.7
3,776,908	-				+0.6
3,777,185	+		Psyr_3152	0.78	-1.4
3,777,186	-		Psyr_3152	0.79	-2.4
3,777,235	+				-1.6
3,777,236	-				+0.9
3,777,236	-				+0.1
3,777,388	+				-1.7
3,777,389	-				-1.5
3,777,389	-				+0.2
3,777,399	+				+0.7
3,777,399	+				+0.7
3,777,399	+				+0.9
3,777,399	+				-1.9
3,777,399	+				-0.3
3,777,399	+				+0.6
3,777,400	-				+0.2
3,777,412	-				-0.2
3,777,418	-				+1.2
3,777,418	-				+0.4
3,777,543	-				-0.7
3,777,606	-				+0.3
3,777,609	+				+0.4
3,777,610	-				-0.3
3,777,622	-				-0.0
3,777,650	+				-0.6
3,777,676	-				-2.0
3,777,764	+				+0.1
3,777,764	+				-1.0
3,777,765	-				+0.4
3,777,844	+				+0.6
3,777,844	+				-0.8
3,777,844	+				-1.7
3,777,844	+				-0.5
3,777,844	+				-0.4
3,777,845	-				-0.4
3,777,845	-				-1.2
3,777,845	-				-1.2
3,777,845	-				-0.4
3,777,889	+				-0.0
3,777,938	-				-0.6
3,778,129	+		Psyr_3153	0.17	-0.7
3,778,205	+		Psyr_3153	0.19	-0.5
3,778,206	-		Psyr_3153	0.19	-0.0
3,778,206	-		Psyr_3153	0.19	-2.0
3,778,206	-		Psyr_3153	0.19	-0.3