Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3131

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3130 and Psyr_3131 overlap by 4 nucleotidesPsyr_3131 and Psyr_3132 overlap by 4 nucleotides Psyr_3130: Psyr_3130 - Secretion protein HlyD, at 3,753,133 to 3,754,320 _3130 Psyr_3131: Psyr_3131 - Secretion protein HlyD, at 3,754,317 to 3,755,408 _3131 Psyr_3132: Psyr_3132 - Acriflavin resistance protein, at 3,755,405 to 3,758,443 _3132 Position (kb) 3754 3755 3756Strain fitness (log2 ratio) -2 -1 0 1 2at 3753.324 kb on - strand, within Psyr_3130at 3753.559 kb on + strand, within Psyr_3130at 3753.559 kb on + strand, within Psyr_3130at 3753.559 kb on + strand, within Psyr_3130at 3753.560 kb on - strand, within Psyr_3130at 3753.594 kb on + strand, within Psyr_3130at 3753.594 kb on + strand, within Psyr_3130at 3753.700 kb on + strand, within Psyr_3130at 3753.700 kb on + strand, within Psyr_3130at 3753.703 kb on - strand, within Psyr_3130at 3753.745 kb on + strand, within Psyr_3130at 3754.330 kb on - strandat 3754.450 kb on + strand, within Psyr_3131at 3754.451 kb on - strand, within Psyr_3131at 3754.506 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.713 kb on + strand, within Psyr_3131at 3754.714 kb on - strand, within Psyr_3131at 3754.714 kb on - strand, within Psyr_3131at 3754.714 kb on - strand, within Psyr_3131at 3754.714 kb on - strand, within Psyr_3131at 3754.833 kb on + strand, within Psyr_3131at 3755.220 kb on + strand, within Psyr_3131at 3755.220 kb on + strand, within Psyr_3131at 3755.220 kb on + strand, within Psyr_3131at 3755.221 kb on - strand, within Psyr_3131at 3755.279 kb on - strand, within Psyr_3131at 3755.338 kb on + strandat 3755.338 kb on + strandat 3755.462 kb on + strandat 3755.463 kb on - strandat 3755.463 kb on - strandat 3755.463 kb on - strandat 3755.651 kb on + strandat 3755.652 kb on - strandat 3755.663 kb on + strandat 3755.664 kb on - strandat 3755.843 kb on + strand, within Psyr_3132at 3755.843 kb on + strand, within Psyr_3132at 3755.843 kb on + strand, within Psyr_3132at 3755.843 kb on + strand, within Psyr_3132at 3755.844 kb on - strand, within Psyr_3132at 3755.844 kb on - strand, within Psyr_3132at 3755.844 kb on - strand, within Psyr_3132at 3755.844 kb on - strand, within Psyr_3132at 3755.889 kb on - strand, within Psyr_3132at 3755.889 kb on - strand, within Psyr_3132at 3755.901 kb on + strand, within Psyr_3132at 3755.902 kb on - strand, within Psyr_3132at 3755.902 kb on - strand, within Psyr_3132at 3755.972 kb on + strand, within Psyr_3132at 3755.973 kb on - strand, within Psyr_3132at 3755.973 kb on - strand, within Psyr_3132

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,753,324 - Psyr_3130 0.16 -0.4
3,753,559 + Psyr_3130 0.36 -0.1
3,753,559 + Psyr_3130 0.36 +0.6
3,753,559 + Psyr_3130 0.36 +1.1
3,753,560 - Psyr_3130 0.36 -2.0
3,753,594 + Psyr_3130 0.39 +0.2
3,753,594 + Psyr_3130 0.39 -1.0
3,753,700 + Psyr_3130 0.48 -0.7
3,753,700 + Psyr_3130 0.48 +0.2
3,753,703 - Psyr_3130 0.48 +0.6
3,753,745 + Psyr_3130 0.52 -1.1
3,754,330 - -1.0
3,754,450 + Psyr_3131 0.12 +0.8
3,754,451 - Psyr_3131 0.12 +1.1
3,754,506 + Psyr_3131 0.17 -1.2
3,754,713 + Psyr_3131 0.36 +0.4
3,754,713 + Psyr_3131 0.36 +0.8
3,754,713 + Psyr_3131 0.36 -0.6
3,754,713 + Psyr_3131 0.36 +1.5
3,754,713 + Psyr_3131 0.36 -0.4
3,754,713 + Psyr_3131 0.36 +1.3
3,754,713 + Psyr_3131 0.36 +0.6
3,754,714 - Psyr_3131 0.36 -1.4
3,754,714 - Psyr_3131 0.36 -0.6
3,754,714 - Psyr_3131 0.36 -0.2
3,754,714 - Psyr_3131 0.36 +0.9
3,754,833 + Psyr_3131 0.47 +0.6
3,755,220 + Psyr_3131 0.83 +0.6
3,755,220 + Psyr_3131 0.83 +0.4
3,755,220 + Psyr_3131 0.83 +1.1
3,755,221 - Psyr_3131 0.83 +0.6
3,755,279 - Psyr_3131 0.88 -0.0
3,755,338 + -1.2
3,755,338 + -1.4
3,755,462 + -0.4
3,755,463 - -1.4
3,755,463 - +0.4
3,755,463 - -0.7
3,755,651 + -0.5
3,755,652 - -0.3
3,755,663 + +0.3
3,755,664 - -0.1
3,755,843 + Psyr_3132 0.14 +2.2
3,755,843 + Psyr_3132 0.14 -1.0
3,755,843 + Psyr_3132 0.14 -1.3
3,755,843 + Psyr_3132 0.14 -0.0
3,755,844 - Psyr_3132 0.14 +0.6
3,755,844 - Psyr_3132 0.14 +0.4
3,755,844 - Psyr_3132 0.14 -1.9
3,755,844 - Psyr_3132 0.14 -0.5
3,755,889 - Psyr_3132 0.16 +0.0
3,755,889 - Psyr_3132 0.16 +1.4
3,755,901 + Psyr_3132 0.16 +0.1
3,755,902 - Psyr_3132 0.16 +0.8
3,755,902 - Psyr_3132 0.16 +0.1
3,755,972 + Psyr_3132 0.19 +0.8
3,755,973 - Psyr_3132 0.19 -1.0
3,755,973 - Psyr_3132 0.19 -0.3

Or see this region's nucleotide sequence