Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3116

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,733,904	+		Psyr_3115	0.32	-0.1
3,734,674	+				+0.6
3,734,675	-				-0.8
3,734,675	-				+1.6
3,734,828	+				-0.4
3,734,829	-				+0.3
3,734,855	+				-1.1
3,734,856	-				-0.0
3,734,856	-				+0.6
3,734,856	-				+0.4
3,734,856	-				-0.7
3,734,856	-				+2.7
3,734,856	-				+0.7
3,734,856	-				+0.4
3,734,958	-		Psyr_3116	0.15	-1.4
3,735,287	+		Psyr_3116	0.45	-1.7
3,735,288	-		Psyr_3116	0.45	-1.0
3,735,288	-		Psyr_3116	0.45	+0.3
3,735,395	-		Psyr_3116	0.55	-0.9
3,735,582	-		Psyr_3116	0.72	-0.3
3,735,652	+		Psyr_3116	0.79	-1.6
3,735,653	-		Psyr_3116	0.79	-2.0
3,735,800	+				-0.6
3,735,800	+				+0.2
3,735,801	-				+0.3
3,735,821	+				-0.9
3,735,821	+				+2.6
3,735,934	+				-0.0
3,735,934	+				-0.4
3,735,935	-				+0.4
3,735,935	-				-1.9
3,735,935	-				+0.4
3,735,952	+				-1.9
3,735,952	+				+1.4
3,735,953	-				+0.0
3,735,994	+				-2.2
3,735,994	+				-0.4
3,735,994	+				-0.4
3,735,994	+				+0.2
3,735,994	+				+1.1
3,735,995	-				-1.6
3,735,995	-				-0.2
3,735,995	-				+0.8
3,735,995	-				-0.2
3,735,995	-				+1.3
3,735,995	-				+0.6
3,735,995	-				+0.3
3,735,995	-				+0.3
3,736,035	+				+1.1
3,736,035	+				-0.2
3,736,035	+				-0.4
3,736,035	+				+0.4
3,736,035	+				-2.1
3,736,035	+				-0.6
3,736,035	+				-0.4
3,736,036	-				-0.4
3,736,036	-				-0.7
3,736,036	-				+0.7
3,736,036	-				-1.3
3,736,036	-				-0.8
3,736,036	-				-1.7
3,736,036	-				+1.6
3,736,156	-		Psyr_3117	0.10	+1.5
3,736,486	-		Psyr_3117	0.38	+0.3
3,736,527	+		Psyr_3117	0.42	-0.4
3,736,528	-		Psyr_3117	0.42	+0.6
3,736,533	+		Psyr_3117	0.42	-0.4
3,736,686	+		Psyr_3117	0.55	+0.7
3,736,687	-		Psyr_3117	0.55	-1.2
3,736,824	+		Psyr_3117	0.67	-0.2
3,736,835	+		Psyr_3117	0.68	-2.2
3,736,836	-		Psyr_3117	0.68	-0.5