Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3090

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,704,192	-		Psyr_3089	0.89	+0.2
3,704,310	+				-0.4
3,704,334	-				-1.0
3,704,464	+				-4.1
3,704,509	-				+1.0
3,704,590	+				-4.1
3,704,685	+				-0.9
3,704,685	+				-0.4
3,704,706	+				+0.6
3,704,706	+				-2.2
3,704,716	-				-1.9
3,704,943	+				-1.4
3,705,010	+				-0.4
3,705,029	+				-1.0
3,705,239	+		Psyr_3090	0.21	-1.0
3,705,348	+		Psyr_3090	0.37	-2.2
3,705,551	+		Psyr_3090	0.68	-1.2
3,705,555	+		Psyr_3090	0.68	-1.9
3,705,556	-		Psyr_3090	0.68	-1.8
3,705,605	+		Psyr_3090	0.76	-0.5
3,705,621	-		Psyr_3090	0.78	+0.6
3,705,737	+				-0.3
3,705,820	+				-0.4
3,705,843	-				-0.0
3,705,858	-				-0.2
3,705,933	-				-0.4
3,705,958	-				+0.6
3,706,035	+				+2.4
3,706,055	-				+0.6
3,706,055	-				+0.2
3,706,216	-				-1.3
3,706,277	+				+1.0
3,706,278	-				-1.7
3,706,278	-				-0.4
3,706,279	+				-1.8
3,706,279	+				-1.4
3,706,344	-				-2.6
3,706,344	-				-0.2
3,706,352	+				-2.0
3,706,433	+				-1.4
3,706,434	-				+1.0
3,706,434	-				-1.1
3,706,434	-				-1.0
3,706,666	+				-0.1
3,706,666	+				-0.8
3,706,666	+				-0.7
3,706,666	+				-0.1
3,706,667	-				-2.2