Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3041

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,639,100	+		Psyr_3039	0.74	-0.4
3,639,100	+		Psyr_3039	0.74	-0.2
3,639,101	-		Psyr_3039	0.74	-0.7
3,639,101	-		Psyr_3039	0.74	-0.7
3,639,133	-		Psyr_3039	0.84	-0.5
3,639,155	+				+0.8
3,639,155	+				-0.1
3,639,259	+				-1.0
3,639,259	+				-2.0
3,639,260	-				-0.0
3,639,380	+		Psyr_3040	0.30	-0.7
3,639,394	+		Psyr_3040	0.34	+0.0
3,639,394	+		Psyr_3040	0.34	-1.4
3,639,434	+		Psyr_3040	0.46	-1.6
3,639,435	-		Psyr_3040	0.46	+0.4
3,639,620	+				-1.0
3,639,620	+				+0.3
3,639,620	+				-0.3
3,639,620	+				+0.4
3,639,620	+				+0.6
3,639,621	-				-1.2
3,639,621	-				+0.4
3,639,621	-				+0.4
3,639,621	-				+0.2
3,639,653	+				+0.8
3,639,654	-				+0.5
3,639,654	-				+0.6
3,639,654	-				+0.2
3,639,722	-				+0.1
3,639,780	+				+0.0
3,639,780	+				-0.3
3,639,781	-				+0.2
3,639,800	+				-0.4
3,639,802	+				+0.1
3,639,802	+				-0.3
3,639,803	-				+0.2
3,639,869	+				-0.7
3,639,870	+				-0.2
3,639,870	-				-0.5
3,639,872	+				-0.3
3,639,873	-				+0.3
3,639,873	-				+0.9
3,639,873	-				+0.7
3,639,928	+				-0.8
3,639,928	+				-0.7
3,639,929	-				+0.7
3,639,929	-				-1.0
3,639,929	-				-0.0
3,639,929	-				-0.9
3,639,942	+				+0.9
3,640,183	+		Psyr_3041	0.28	-0.4
3,640,204	+		Psyr_3041	0.30	+0.6
3,640,205	-		Psyr_3041	0.30	+0.9
3,640,205	-		Psyr_3041	0.30	-1.0
3,640,213	+		Psyr_3041	0.31	-0.0
3,640,213	+		Psyr_3041	0.31	-0.9
3,640,310	+		Psyr_3041	0.40	-0.2
3,640,311	-		Psyr_3041	0.40	-0.2
3,640,311	-		Psyr_3041	0.40	+0.3
3,640,311	-		Psyr_3041	0.40	+0.9
3,640,351	+		Psyr_3041	0.43	+1.6
3,640,634	-		Psyr_3041	0.70	-0.3
3,640,691	-		Psyr_3041	0.75	-0.8
3,640,691	-		Psyr_3041	0.75	-0.0
3,640,692	+		Psyr_3041	0.75	-0.2
3,640,693	-		Psyr_3041	0.75	-1.9
3,640,718	+		Psyr_3041	0.78	-0.3
3,640,718	+		Psyr_3041	0.78	-0.6
3,640,719	-		Psyr_3041	0.78	-0.1
3,640,719	-		Psyr_3041	0.78	-1.2
3,640,719	-		Psyr_3041	0.78	-0.4
3,640,719	-		Psyr_3041	0.78	-1.0
3,640,719	-		Psyr_3041	0.78	-0.4
3,640,719	-		Psyr_3041	0.78	+0.6
3,640,871	+				+0.1
3,640,871	+				+1.0
3,640,871	+				-0.2
3,640,952	+				+0.0
3,640,953	-				-0.0
3,640,955	-				+0.4
3,640,955	-				+1.0
3,640,955	-				-1.0
3,641,084	+		Psyr_3042	0.32	+1.2
3,641,085	-		Psyr_3042	0.33	-0.0
3,641,282	+				-0.2
3,641,282	+				+0.2
3,641,282	+				+1.6
3,641,282	+				-0.1
3,641,283	-				-0.4
3,641,283	-				+0.6
3,641,283	-				-1.0
3,641,283	-				+1.1
3,641,284	+				-0.1
3,641,284	+				+0.7
3,641,285	-				-0.1
3,641,285	-				-0.0
3,641,285	-				-0.4
3,641,285	-				-0.4
3,641,464	-				+2.0
3,641,464	-				-0.8
3,641,500	-				-0.3
3,641,530	+				-0.3
3,641,703	+		Psyr_3043	0.25	-0.0
3,641,703	+		Psyr_3043	0.25	+1.1
3,641,703	+		Psyr_3043	0.25	+1.2
3,641,704	-		Psyr_3043	0.25	+0.3
3,641,928	+		Psyr_3043	0.60	+0.3
3,641,928	+		Psyr_3043	0.60	-0.2
3,641,929	-		Psyr_3043	0.60	-0.2
3,641,929	-		Psyr_3043	0.60	+0.6
3,641,929	-		Psyr_3043	0.60	+2.7
3,641,929	-		Psyr_3043	0.60	-0.0