Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2989

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,580,015	-		Psyr_2988	0.40	+0.1
3,580,226	+		Psyr_2988	0.53	-0.1
3,580,263	+		Psyr_2988	0.56	+0.7
3,580,263	+		Psyr_2988	0.56	-1.2
3,580,263	+		Psyr_2988	0.56	+1.4
3,580,264	-		Psyr_2988	0.56	-0.6
3,580,264	-		Psyr_2988	0.56	+0.3
3,580,596	+		Psyr_2988	0.78	-0.2
3,580,597	-		Psyr_2988	0.78	-0.4
3,580,597	-		Psyr_2988	0.78	+0.2
3,580,629	+		Psyr_2988	0.80	+0.6
3,580,629	+		Psyr_2988	0.80	+0.6
3,580,629	+		Psyr_2988	0.80	-0.2
3,580,630	-		Psyr_2988	0.80	+0.6
3,580,630	-		Psyr_2988	0.80	-0.7
3,580,671	-		Psyr_2988	0.82	-0.2
3,580,824	+				+1.3
3,580,940	+				+0.6
3,580,940	+				+2.2
3,580,940	+				+1.2
3,581,387	+		Psyr_2989	0.46	-1.4
3,581,387	+		Psyr_2989	0.46	-0.7
3,581,387	+		Psyr_2989	0.46	-0.4
3,581,387	+		Psyr_2989	0.46	+1.6
3,581,523	-		Psyr_2989	0.60	-0.8
3,581,523	-		Psyr_2989	0.60	-0.7
3,581,570	+		Psyr_2989	0.65	-0.4
3,581,570	+		Psyr_2989	0.65	-0.2
3,581,570	+		Psyr_2989	0.65	-0.8
3,581,570	+		Psyr_2989	0.65	-1.4
3,581,571	-		Psyr_2989	0.65	-0.2
3,581,571	-		Psyr_2989	0.65	+1.2
3,581,571	-		Psyr_2989	0.65	+3.2
3,581,571	-		Psyr_2989	0.65	+0.2
3,581,621	+		Psyr_2989	0.70	-1.0
3,581,622	-		Psyr_2989	0.70	+0.6
3,581,622	-		Psyr_2989	0.70	-1.9
3,581,622	-		Psyr_2989	0.70	+0.9
3,581,622	-		Psyr_2989	0.70	-0.4
3,581,828	+				-0.2
3,581,829	-				-0.7
3,581,829	-				-0.8
3,581,926	+				-0.9
3,581,926	+				+0.1
3,581,927	-				-1.0
3,581,988	-				+0.6
3,582,071	-				-1.7
3,582,149	-				-2.9
3,582,236	+				-0.1
3,582,236	+				+2.6
3,582,236	+				-1.4
3,582,236	+				-0.9
3,582,236	+				+1.1
3,582,236	+				+0.2
3,582,236	+				+0.7
3,582,237	-				-0.8
3,582,237	-				-2.0
3,582,237	-				-2.0
3,582,237	-				-1.0
3,582,237	-				-0.6
3,582,239	+				+1.3
3,582,239	+				+0.6
3,582,265	+		Psyr_2990	0.22	-0.3
3,582,299	+		Psyr_2990	0.42	-0.3
3,582,300	-		Psyr_2990	0.43	-0.5
3,582,409	+				-1.3
3,582,409	+				+0.4
3,582,409	+				+0.4
3,582,561	+				+0.6
3,582,612	+		Psyr_2991	0.11	+0.4
3,582,613	-		Psyr_2991	0.11	-0.4
3,582,613	-		Psyr_2991	0.11	-0.7
3,582,613	-		Psyr_2991	0.11	-0.2
3,582,613	-		Psyr_2991	0.11	-0.9
3,582,613	-		Psyr_2991	0.11	+0.8
3,582,613	-		Psyr_2991	0.11	-0.5
3,582,883	-		Psyr_2991	0.66	-0.8