Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2980

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,572,482	+		Psyr_2979	0.36	-0.7
3,572,483	-		Psyr_2979	0.36	+0.8
3,572,503	+		Psyr_2979	0.38	+1.3
3,572,504	-		Psyr_2979	0.38	-1.7
3,572,578	+		Psyr_2979	0.43	-1.7
3,572,825	-		Psyr_2979	0.61	+1.3
3,572,869	+		Psyr_2979	0.65	-0.6
3,572,965	+		Psyr_2979	0.72	-1.0
3,572,965	+		Psyr_2979	0.72	-1.6
3,572,965	+		Psyr_2979	0.72	-1.4
3,572,965	+		Psyr_2979	0.72	-2.4
3,572,965	+		Psyr_2979	0.72	+0.1
3,572,966	-		Psyr_2979	0.72	+0.2
3,572,966	-		Psyr_2979	0.72	+0.7
3,573,042	+		Psyr_2979	0.77	-2.2
3,573,043	-		Psyr_2979	0.77	-0.3
3,573,058	+		Psyr_2979	0.78	-1.4
3,573,237	+				-0.7
3,573,237	+				-0.1
3,573,238	-				-0.0
3,573,238	-				+0.3
3,573,238	-				-0.5
3,573,238	-				+0.6
3,573,238	-				+0.3
3,573,324	+				-0.7
3,573,325	-				-1.0
3,573,354	+				+0.6
3,573,355	-				-3.1
3,573,371	+				+0.4
3,573,372	-				-0.4
3,573,372	-				+1.0
3,573,450	+				-1.9
3,573,451	-				+0.2
3,573,474	+				-3.1
3,573,475	-				-0.2
3,573,475	-				+1.6
3,573,475	-				-0.4
3,573,555	+		Psyr_2980	0.12	-2.2
3,573,555	+		Psyr_2980	0.12	+0.6
3,573,556	-		Psyr_2980	0.12	+0.1
3,573,556	-		Psyr_2980	0.12	-2.4
3,573,783	+		Psyr_2980	0.39	-2.0
3,573,783	+		Psyr_2980	0.39	-0.9
3,573,783	+		Psyr_2980	0.39	-1.0
3,573,784	-		Psyr_2980	0.40	-1.7
3,573,784	-		Psyr_2980	0.40	-1.0
3,573,784	-		Psyr_2980	0.40	-1.0
3,574,084	-		Psyr_2980	0.75	-0.4
3,574,180	-		Psyr_2980	0.87	-0.4
3,574,333	+				-1.0
3,574,333	+				-0.4
3,574,334	-				-1.0
3,574,353	+				-0.4
3,574,353	+				-2.0
3,574,354	-				+0.1
3,574,354	-				+0.6
3,574,386	+				-1.5
3,574,394	+				+0.1
3,574,394	+				-0.4
3,574,401	-				+0.2
3,574,406	+				-0.3
3,574,406	+				-0.6
3,574,406	+				+0.6
3,574,406	+				-0.2
3,574,406	+				-3.5
3,574,407	-				+0.2
3,574,407	-				+0.1
3,574,407	-				-2.0
3,574,407	-				-0.3
3,574,407	-				-0.0
3,574,407	-				-1.2
3,574,426	-				-0.4
3,574,438	+				-0.7
3,574,438	+				-1.0
3,574,438	+				-0.1
3,574,438	+				-0.0
3,574,439	-				+1.9
3,574,439	-				+2.2
3,574,439	-				-0.4
3,574,439	-				+1.6
3,574,461	-				-0.4
3,574,471	-				+0.6
3,574,521	+				+0.6
3,574,521	+				-2.4
3,574,521	+				-0.4
3,574,522	-				-0.5
3,574,522	-				-0.0
3,574,522	-				-0.2
3,574,522	-				+1.4
3,574,522	-				+0.2
3,574,573	+				-0.0
3,574,573	+				+1.1
3,574,574	-				-0.9
3,574,574	-				-0.2
3,574,574	-				-0.7
3,574,605	+				+1.1
3,574,605	+				-0.2
3,574,605	+				-2.0
3,574,605	+				-1.4
3,574,605	+				-2.2
3,574,606	-				-1.5
3,574,606	-				-0.4
3,574,609	-				-0.6
3,574,646	+				-0.5
3,574,730	+		Psyr_2981	0.23	-0.7
3,574,730	+		Psyr_2981	0.23	-0.6
3,574,943	+				-1.2
3,574,944	-				-1.4
3,575,118	+		Psyr_2982	0.33	+0.2
3,575,282	+		Psyr_2982	0.79	+1.3
3,575,282	+		Psyr_2982	0.79	+2.2
3,575,282	+		Psyr_2982	0.79	-0.9
3,575,282	+		Psyr_2982	0.79	-0.0
3,575,282	+		Psyr_2982	0.79	-2.0
3,575,283	-		Psyr_2982	0.80	-1.0
3,575,283	-		Psyr_2982	0.80	-0.0
3,575,283	-		Psyr_2982	0.80	+0.8