Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2880

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,454,917	+				+0.3
3,454,917	+				-1.1
3,454,917	+				+2.0
3,454,918	-				+0.6
3,454,918	-				-0.7
3,454,918	-				+0.3
3,454,922	+				-1.4
3,454,923	-				-1.4
3,455,008	+				-1.6
3,455,075	-		Psyr_2879	0.18	-1.1
3,455,075	-		Psyr_2879	0.18	+1.3
3,455,380	+		Psyr_2879	0.89	-0.5
3,455,380	+		Psyr_2879	0.89	-0.2
3,455,381	-		Psyr_2879	0.89	+1.0
3,455,439	+				+0.6
3,455,456	+				-1.4
3,455,456	+				+0.9
3,455,457	-				-0.1
3,455,457	-				+0.3
3,455,460	+				+0.9
3,455,460	+				+0.6
3,455,461	-				-0.4
3,455,461	-				+1.2
3,455,461	-				+0.8
3,455,501	+				-1.0
3,455,586	+				-0.4
3,455,586	+				-0.1
3,455,586	+				-1.4
3,455,586	+				-1.3
3,455,586	+				-0.4
3,455,586	+				-1.9
3,455,587	-				+0.2
3,455,587	-				+2.2
3,455,587	-				-0.7
3,455,731	+				-1.9
3,455,731	+				-1.1
3,455,732	-				+1.2
3,455,732	-				-1.8
3,455,732	-				+0.8
3,455,732	-				-0.6
3,455,732	-				+0.0
3,455,732	-				-1.7
3,455,733	+				-1.5
3,455,734	-				+1.9
3,455,734	-				+1.3
3,455,734	-				-0.7
3,455,734	-				+0.3
3,455,742	-				-0.4
3,455,861	+				-1.4
3,455,861	+				-1.4
3,455,862	-				-0.1
3,455,862	-				-0.7
3,455,862	-				+1.6
3,455,863	+				-3.1
3,455,914	+				-2.4
3,455,914	+				-1.4
3,455,915	-				-1.2
3,455,915	-				+1.6
3,455,915	-				+0.6
3,455,916	+				+0.2
3,455,916	+				-2.0
3,455,916	+				+2.2
3,455,916	+				-1.7
3,455,917	-				-0.6
3,455,917	-				+1.0
3,455,917	-				-0.5
3,455,920	+				-0.2
3,455,920	+				-1.0
3,455,921	-				-0.8
3,455,921	-				+0.4
3,456,070	+		Psyr_2880	0.35	-1.7
3,456,070	+		Psyr_2880	0.35	-2.4
3,456,070	+		Psyr_2880	0.35	-1.7
3,456,070	+		Psyr_2880	0.35	-2.9
3,456,070	+		Psyr_2880	0.35	-0.1
3,456,070	+		Psyr_2880	0.35	-3.3
3,456,071	-		Psyr_2880	0.36	-2.6
3,456,071	-		Psyr_2880	0.36	+0.6
3,456,071	-		Psyr_2880	0.36	-0.4
3,456,071	-		Psyr_2880	0.36	-0.1
3,456,071	-		Psyr_2880	0.36	-1.1
3,456,071	-		Psyr_2880	0.36	+0.5
3,456,071	-		Psyr_2880	0.36	-1.6
3,456,071	-		Psyr_2880	0.36	-0.1
3,456,071	-		Psyr_2880	0.36	+0.6
3,456,101	+		Psyr_2880	0.42	-0.8
3,456,101	+		Psyr_2880	0.42	+0.6
3,456,101	+		Psyr_2880	0.42	-1.0
3,456,101	+		Psyr_2880	0.42	-2.7
3,456,102	-		Psyr_2880	0.42	+0.4
3,456,102	-		Psyr_2880	0.42	+0.2
3,456,102	-		Psyr_2880	0.42	-0.1
3,456,104	+		Psyr_2880	0.43	+0.6
3,456,105	-		Psyr_2880	0.43	-0.4
3,456,105	-		Psyr_2880	0.43	-1.8
3,456,105	-		Psyr_2880	0.43	-0.1
3,456,105	-		Psyr_2880	0.43	-0.0
3,456,105	-		Psyr_2880	0.43	-1.6
3,456,267	+		Psyr_2880	0.79	-2.1
3,456,286	+		Psyr_2880	0.83	+0.2
3,456,287	-		Psyr_2880	0.84	+0.3
3,456,287	-		Psyr_2880	0.84	-1.2
3,456,287	-		Psyr_2880	0.84	+0.1
3,456,327	-				+0.3
3,456,327	-				-0.1
3,456,520	-				-2.0
3,456,520	-				+1.6
3,456,520	-				+0.0
3,456,532	+				+0.2
3,456,543	-				-1.0
3,456,543	-				-0.1
3,456,543	-				-1.1
3,456,543	-				+0.3
3,456,574	+				+0.1
3,456,620	+				+1.2
3,456,621	-				+1.3
3,456,621	-				-2.2
3,456,621	-				-0.7
3,456,624	+				+0.2
3,456,624	+				-0.1
3,456,625	-				+0.5
3,456,627	+				-0.4
3,456,665	+				-0.1
3,456,665	+				-0.5
3,456,665	+				-0.2
3,456,666	-				+2.3
3,456,666	-				-1.7
3,456,699	+				+0.6
3,456,721	+				+0.2
3,456,721	+				+0.2
3,456,721	+				+0.2
3,456,722	-				+0.1
3,456,722	-				+0.1
3,456,722	-				+0.6
3,456,722	-				+1.2
3,456,722	-				+0.8
3,456,778	+				-0.8
3,456,778	+				+0.4
3,456,779	-				-1.2
3,456,779	-				+1.2
3,456,848	+		Psyr_2881	0.17	+0.0
3,456,849	-		Psyr_2881	0.17	-0.8
3,456,850	+		Psyr_2881	0.18	-1.3
3,456,850	+		Psyr_2881	0.18	-0.5
3,456,851	-		Psyr_2881	0.18	+1.3
3,456,960	+				-0.4
3,456,964	+		Psyr_2881	0.32	+0.6
3,456,964	+		Psyr_2881	0.32	+0.3
3,456,964	+		Psyr_2881	0.32	+0.3
3,456,965	-		Psyr_2881	0.33	+0.0
3,456,965	-		Psyr_2881	0.33	+0.6
3,456,965	-		Psyr_2881	0.33	-0.5
3,456,965	-		Psyr_2881	0.33	+0.6
3,456,967	+		Psyr_2881	0.33	+0.7
3,456,967	+		Psyr_2881	0.33	-1.0
3,456,990	+		Psyr_2881	0.36	+1.0
3,457,078	+		Psyr_2881	0.47	-0.6
3,457,120	+		Psyr_2881	0.53	+1.6
3,457,121	-		Psyr_2881	0.53	+1.3
3,457,139	-		Psyr_2881	0.55	-0.4
3,457,153	+		Psyr_2881	0.57	+0.5
3,457,323	-		Psyr_2881	0.79	+0.2
3,457,336	+		Psyr_2881	0.81	-0.6