Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2842

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,413,632	+		Psyr_2840	0.73	-3.1
3,413,633	-		Psyr_2840	0.74	-0.8
3,413,659	+		Psyr_2840	0.78	-1.0
3,413,660	-		Psyr_2840	0.78	-2.0
3,413,792	+				-0.0
3,413,792	+				-0.0
3,413,792	+				+1.3
3,413,793	-				+0.6
3,413,793	-				+1.2
3,413,793	-				-1.3
3,413,827	+				-0.4
3,413,827	+				-0.0
3,413,827	+				-2.4
3,413,827	+				+0.4
3,413,827	+				+1.2
3,413,827	+				+1.2
3,413,827	+				-0.4
3,413,827	+				-1.0
3,413,827	+				+0.2
3,413,827	+				-0.7
3,413,827	+				+1.2
3,413,827	+				-3.8
3,413,828	-				+0.9
3,413,828	-				-1.0
3,413,828	-				-0.6
3,413,828	-				+0.6
3,413,828	-				-0.3
3,413,828	-				-0.1
3,413,828	-				-0.2
3,413,828	-				-0.4
3,413,828	-				+0.6
3,413,828	-				-0.0
3,413,828	-				+1.3
3,413,828	-				-2.6
3,413,828	-				-1.6
3,413,828	-				+1.9
3,413,828	-				-0.1
3,413,828	-				-0.4
3,413,829	+				-0.7
3,413,829	+				+1.0
3,413,829	+				-0.2
3,413,830	-				-0.4
3,413,830	-				-2.4
3,413,830	-				-0.5
3,413,830	-				-0.7
3,413,830	-				-1.0
3,413,906	+				+0.9
3,413,906	+				-1.0
3,413,906	+				-0.6
3,413,907	-				+1.6
3,413,907	-				+1.0
3,413,927	+				+0.4
3,413,927	+				+1.2
3,413,927	+				+0.6
3,413,927	+				-0.4
3,413,927	+				-0.4
3,413,927	+				-0.4
3,413,927	+				-0.4
3,413,928	-				-0.3
3,413,928	-				+0.6
3,413,928	-				+1.0
3,413,971	+		Psyr_2841	0.13	-1.0
3,413,971	+		Psyr_2841	0.13	-0.4
3,413,971	+		Psyr_2841	0.13	-0.9
3,413,971	+		Psyr_2841	0.13	+1.0
3,413,971	+		Psyr_2841	0.13	-0.3
3,414,056	+		Psyr_2841	0.27	-0.4
3,414,056	+		Psyr_2841	0.27	-1.7
3,414,056	+		Psyr_2841	0.27	-1.0
3,414,095	+		Psyr_2841	0.33	-0.6
3,414,095	+		Psyr_2841	0.33	+0.3
3,414,095	+		Psyr_2841	0.33	-0.0
3,414,095	+		Psyr_2841	0.33	-2.6
3,414,095	+		Psyr_2841	0.33	+0.4
3,414,095	+		Psyr_2841	0.33	+0.6
3,414,095	+		Psyr_2841	0.33	+0.6
3,414,096	-		Psyr_2841	0.33	+1.0
3,414,096	-		Psyr_2841	0.33	+0.9
3,414,096	-		Psyr_2841	0.33	-0.8
3,414,096	-		Psyr_2841	0.33	-0.4
3,414,096	-		Psyr_2841	0.33	-0.3
3,414,096	-		Psyr_2841	0.33	-0.9
3,414,096	-		Psyr_2841	0.33	-0.2
3,414,096	-		Psyr_2841	0.33	-0.3
3,414,156	+		Psyr_2841	0.43	+0.8
3,414,157	-		Psyr_2841	0.43	-0.6
3,414,157	-		Psyr_2841	0.43	-3.5
3,414,157	-		Psyr_2841	0.43	-0.0
3,414,157	-		Psyr_2841	0.43	+0.7
3,414,299	+		Psyr_2841	0.67	-1.0
3,414,299	+		Psyr_2841	0.67	-1.0
3,414,300	-		Psyr_2841	0.67	-0.4
3,414,342	+		Psyr_2841	0.74	-1.6
3,414,342	+		Psyr_2841	0.74	+0.2
3,414,342	+		Psyr_2841	0.74	+0.5
3,414,342	+		Psyr_2841	0.74	-0.8
3,414,342	+		Psyr_2841	0.74	-1.7
3,414,342	+		Psyr_2841	0.74	-1.0
3,414,342	+		Psyr_2841	0.74	+1.9
3,414,343	-		Psyr_2841	0.74	+0.6
3,414,343	-		Psyr_2841	0.74	-0.6
3,414,343	-		Psyr_2841	0.74	-0.4
3,414,343	-		Psyr_2841	0.74	+1.6
3,414,411	+		Psyr_2841	0.85	-1.7
3,414,411	+		Psyr_2841	0.85	-1.0
3,414,412	-		Psyr_2841	0.85	-0.4
3,414,412	-		Psyr_2841	0.85	+1.3
3,414,458	+				-2.0
3,414,458	+				-2.2
3,414,458	+				-1.0
3,414,458	+				-1.7
3,414,458	+				-1.4
3,414,459	-				+0.4
3,414,459	-				-1.4
3,414,459	-				+2.6
3,414,459	-				-2.4
3,414,513	+				+0.8
3,414,517	+				-3.0
3,414,517	+				+1.4
3,414,598	+				+0.6
3,414,598	+				-1.1
3,414,598	+				-2.4
3,414,599	-				+0.6
3,414,599	-				+0.6
3,414,599	-				+0.3
3,414,691	+		Psyr_2842	0.14	-0.3
3,414,691	+		Psyr_2842	0.14	-1.0
3,414,692	-		Psyr_2842	0.14	-0.4
3,414,692	-		Psyr_2842	0.14	-0.4
3,414,692	-		Psyr_2842	0.14	+2.9
3,414,718	-		Psyr_2842	0.17	-0.1
3,414,718	-		Psyr_2842	0.17	+0.1
3,414,718	-		Psyr_2842	0.17	+0.6
3,414,749	+		Psyr_2842	0.21	+0.6
3,414,762	-		Psyr_2842	0.22	-0.2
3,414,763	+		Psyr_2842	0.22	-1.7
3,414,818	+		Psyr_2842	0.29	-2.7
3,414,822	-		Psyr_2842	0.29	-0.9
3,414,843	+		Psyr_2842	0.32	-1.4
3,414,844	-		Psyr_2842	0.32	-0.1
3,414,865	+		Psyr_2842	0.35	-1.7
3,414,866	-		Psyr_2842	0.35	-2.4
3,414,869	+		Psyr_2842	0.35	-1.7
3,414,870	-		Psyr_2842	0.35	-0.6
3,414,878	+		Psyr_2842	0.36	+0.6
3,414,878	+				-1.0
3,414,906	+		Psyr_2842	0.39	-1.4
3,414,907	-		Psyr_2842	0.40	+0.7
3,414,936	+		Psyr_2842	0.43	-1.6
3,414,947	+		Psyr_2842	0.44	-1.0
3,414,952	-		Psyr_2842	0.45	-0.5
3,414,994	+				-1.7
3,414,994	+		Psyr_2842	0.50	-1.0
3,414,995	-		Psyr_2842	0.50	-2.2
3,414,999	-		Psyr_2842	0.51	+0.6
3,415,002	+		Psyr_2842	0.51	-1.0
3,415,003	-		Psyr_2842	0.51	-2.7
3,415,020	+		Psyr_2842	0.53	-2.2
3,415,050	+		Psyr_2842	0.57	-2.7
3,415,050	+		Psyr_2842	0.57	+0.3
3,415,051	-		Psyr_2842	0.57	+0.9
3,415,051	-		Psyr_2842	0.57	-1.9
3,415,053	-		Psyr_2842	0.57	-0.6
3,415,055	+		Psyr_2842	0.57	+0.6
3,415,056	-		Psyr_2842	0.58	-0.0
3,415,069	+		Psyr_2842	0.59	-1.4
3,415,140	+		Psyr_2842	0.68	-1.0
3,415,140	+		Psyr_2842	0.68	-1.7
3,415,145	-		Psyr_2842	0.68	-2.0
3,415,274	+		Psyr_2842	0.84	+1.0
3,415,275	-		Psyr_2842	0.84	-0.4
3,415,363	-				-0.4
3,415,363	-				-0.5
3,415,363	-				-0.4
3,415,363	-				-0.4
3,415,441	+				-3.2
3,415,441	+				+0.6
3,415,441	+				+2.2
3,415,441	+				+0.8
3,415,441	+				+0.2
3,415,442	-				-1.4
3,415,442	-				+0.1
3,415,442	-				-0.4
3,415,442	-				-1.7
3,415,675	-		Psyr_2843	0.11	-0.0
3,415,675	-		Psyr_2843	0.11	-2.0
3,415,675	-		Psyr_2843	0.11	+0.3
3,415,675	-		Psyr_2843	0.11	-0.3
3,415,863	+		Psyr_2843	0.20	+1.0
3,415,863	+		Psyr_2843	0.20	-0.0
3,416,102	-		Psyr_2843	0.31	-0.3
3,416,254	-		Psyr_2843	0.38	-0.3
3,416,254	-		Psyr_2843	0.38	-0.0