Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2837

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,409,978	+		Psyr_2835	0.73	+0.6
3,409,978	+		Psyr_2835	0.73	-0.0
3,409,978	+		Psyr_2835	0.73	+1.6
3,409,978	+		Psyr_2835	0.73	-1.0
3,409,978	+		Psyr_2835	0.73	-1.1
3,409,978	+		Psyr_2835	0.73	-0.6
3,409,978	+		Psyr_2835	0.73	+0.3
3,409,978	+		Psyr_2835	0.73	+0.3
3,409,978	+		Psyr_2835	0.73	+0.1
3,409,978	+		Psyr_2835	0.73	-0.4
3,409,979	-		Psyr_2835	0.73	+1.0
3,409,979	-		Psyr_2835	0.73	+1.6
3,409,979	-		Psyr_2835	0.73	+0.9
3,409,979	-		Psyr_2835	0.73	-0.2
3,409,979	-		Psyr_2835	0.73	+0.4
3,409,979	-		Psyr_2835	0.73	+1.0
3,409,979	-		Psyr_2835	0.73	-0.6
3,409,979	-		Psyr_2835	0.73	-0.3
3,409,979	-		Psyr_2835	0.73	-0.2
3,409,979	-		Psyr_2835	0.73	-0.6
3,410,044	+		Psyr_2835	0.84	+0.4
3,410,044	+		Psyr_2835	0.84	-0.8
3,410,045	-		Psyr_2835	0.85	+0.9
3,410,122	-				-0.4
3,410,471	+		Psyr_2836	0.54	-1.9
3,410,471	+		Psyr_2836	0.54	+0.3
3,410,471	+		Psyr_2836	0.54	+0.3
3,410,471	+		Psyr_2836	0.54	-1.6
3,410,471	+		Psyr_2836	0.54	+1.2
3,410,472	-		Psyr_2836	0.54	+0.6
3,410,472	-		Psyr_2836	0.54	+0.4
3,410,472	-		Psyr_2836	0.54	-0.4
3,410,510	+		Psyr_2836	0.60	-1.0
3,410,612	-		Psyr_2836	0.76	+0.3
3,410,612	-		Psyr_2836	0.76	+1.6
3,410,651	-		Psyr_2836	0.82	+0.6
3,410,760	-				+0.7
3,410,760	-				-0.2
3,410,785	-				-1.0
3,410,890	+		Psyr_2837	0.13	-1.4
3,410,919	-		Psyr_2837	0.16	-0.6
3,410,997	-		Psyr_2837	0.24	+0.2
3,411,003	-		Psyr_2837	0.25	-0.8
3,411,162	-		Psyr_2837	0.41	-3.2
3,411,197	-		Psyr_2837	0.45	-2.2
3,411,227	+		Psyr_2837	0.48	+1.1
3,411,227	+		Psyr_2837	0.48	-0.6
3,411,227	+		Psyr_2837	0.48	-1.2
3,411,227	+		Psyr_2837	0.48	-1.2
3,411,227	+		Psyr_2837	0.48	+0.3
3,411,227	+		Psyr_2837	0.48	-0.4
3,411,228	-		Psyr_2837	0.48	-1.9
3,411,239	+		Psyr_2837	0.49	-0.9
3,411,239	+		Psyr_2837	0.49	-1.0
3,411,287	+		Psyr_2837	0.54	-0.3
3,411,306	-		Psyr_2837	0.56	-2.4
3,411,307	+		Psyr_2837	0.56	-0.1
3,411,308	-		Psyr_2837	0.56	-0.6
3,411,326	-		Psyr_2837	0.58	-1.8
3,411,349	+		Psyr_2837	0.60	-0.4
3,411,349	+		Psyr_2837	0.60	+0.3
3,411,349	+		Psyr_2837	0.60	-1.0
3,411,349	+		Psyr_2837	0.60	-1.4
3,411,349	+		Psyr_2837	0.60	-1.0
3,411,349	+		Psyr_2837	0.60	-0.6
3,411,349	+		Psyr_2837	0.60	+0.0
3,411,349	+		Psyr_2837	0.60	+0.0
3,411,349	+		Psyr_2837	0.60	-0.2
3,411,350	-		Psyr_2837	0.61	-0.4
3,411,350	-		Psyr_2837	0.61	-0.8
3,411,350	-		Psyr_2837	0.61	-3.3
3,411,350	-		Psyr_2837	0.61	-2.9
3,411,350	-		Psyr_2837	0.61	-0.2
3,411,384	+		Psyr_2837	0.64	-0.0
3,411,384	+		Psyr_2837	0.64	-1.0
3,411,384	+		Psyr_2837	0.64	-0.4
3,411,385	-		Psyr_2837	0.64	-0.3
3,411,385	-		Psyr_2837	0.64	-0.9
3,411,385	-		Psyr_2837	0.64	-0.7
3,411,402	-		Psyr_2837	0.66	-4.2
3,411,437	+		Psyr_2837	0.70	-0.4
3,411,438	-		Psyr_2837	0.70	-0.1
3,411,438	-		Psyr_2837	0.70	-2.9
3,411,438	-		Psyr_2837	0.70	-3.2
3,411,438	-		Psyr_2837	0.70	-1.1
3,411,449	+		Psyr_2837	0.71	+0.6
3,411,450	-		Psyr_2837	0.71	-0.2
3,411,450	-		Psyr_2837	0.71	-1.7
3,411,494	+		Psyr_2837	0.75	-1.1
3,411,495	-		Psyr_2837	0.76	-1.7
3,411,512	+		Psyr_2837	0.77	-0.9
3,411,517	+		Psyr_2837	0.78	+0.3
3,411,521	+		Psyr_2837	0.78	+1.6
3,411,521	+		Psyr_2837	0.78	-0.1
3,411,521	+		Psyr_2837	0.78	-1.0
3,411,522	-		Psyr_2837	0.78	-0.4
3,411,590	+		Psyr_2837	0.85	-0.0
3,411,591	-		Psyr_2837	0.86	-0.4
3,411,616	+		Psyr_2837	0.88	-0.1
3,411,616	+		Psyr_2837	0.88	+0.4
3,411,616	+		Psyr_2837	0.88	-3.5
3,411,743	+				-0.2
3,411,743	+				+0.7
3,411,743	+				+0.2
3,411,744	-				-1.2
3,411,746	+				-0.1
3,411,768	-				-0.6
3,411,806	-				+0.6
3,411,825	+				+0.8
3,411,825	+				+0.3
3,411,864	+				+0.4
3,411,864	+				+0.2
3,411,864	+				-1.4
3,411,864	+				+0.2
3,411,865	-				-0.4
3,411,865	-				-0.2
3,411,865	-				-1.0
3,411,899	+				-0.2
3,411,899	+				+0.4
3,411,899	+				-0.3
3,411,899	+				-0.6
3,411,899	+				+0.6
3,411,900	-				-0.4
3,411,900	-				-0.1
3,412,099	+		Psyr_2838	0.56	+0.2
3,412,099	+		Psyr_2838	0.56	-0.1
3,412,100	-		Psyr_2838	0.56	+0.6
3,412,100	-		Psyr_2838	0.56	+1.2
3,412,100	-		Psyr_2838	0.56	-0.6
3,412,187	+		Psyr_2838	0.81	-0.3
3,412,280	+				-0.3
3,412,280	+				-0.4
3,412,280	+				-0.1
3,412,280	+				+0.1
3,412,280	+				+0.3
3,412,280	+				-0.4
3,412,280	+				+0.1
3,412,280	+				-0.4
3,412,280	+				-0.4
3,412,281	-				+0.1
3,412,281	-				+0.6
3,412,281	-				-0.2
3,412,281	-				-0.1
3,412,281	-				-1.6
3,412,281	-				+0.3
3,412,301	+				+0.6
3,412,302	-				-0.7
3,412,302	-				+0.4
3,412,302	-				+1.4
3,412,476	+		Psyr_2839	0.24	+0.1
3,412,476	+		Psyr_2839	0.24	+1.6
3,412,476	+		Psyr_2839	0.24	+0.8
3,412,476	+		Psyr_2839	0.24	-3.1
3,412,476	+		Psyr_2839	0.24	-0.2
3,412,476	+		Psyr_2839	0.24	+1.5
3,412,476	+		Psyr_2839	0.24	-1.4
3,412,476	+		Psyr_2839	0.24	+0.6
3,412,476	+		Psyr_2839	0.24	+0.1
3,412,476	+		Psyr_2839	0.24	+0.3
3,412,476	+		Psyr_2839	0.24	+0.6
3,412,476	+		Psyr_2839	0.24	-0.0
3,412,477	-				-0.4
3,412,623	+		Psyr_2839	0.42	-0.8
3,412,670	+		Psyr_2839	0.48	+0.3
3,412,671	-		Psyr_2839	0.48	+0.6