Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2824

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,397,211	+				+0.4
3,397,558	+		Psyr_2823	0.90	-0.7
3,397,559	-				+1.0
3,397,616	+				-1.7
3,397,617	-				+0.6
3,397,617	-				+0.6
3,397,617	-				+1.5
3,397,617	-				-0.5
3,397,617	-				-1.2
3,397,621	-				-0.7
3,397,664	+				-0.2
3,397,664	+				-0.4
3,397,664	+				-0.7
3,397,664	+				-0.4
3,397,665	-				+0.6
3,397,721	+				-1.5
3,397,757	-				+0.6
3,397,821	+				-2.7
3,397,822	-				+1.7
3,397,852	+				+0.6
3,397,853	-				-0.2
3,397,975	-				+0.6
3,398,122	-				+1.3
3,398,154	+				-2.6
3,398,181	+				+0.6
3,398,244	+		Psyr_2824	0.15	-2.4
3,398,262	+		Psyr_2824	0.17	-1.7
3,398,263	-		Psyr_2824	0.18	-1.4
3,398,263	-		Psyr_2824	0.18	-2.0
3,398,263	-		Psyr_2824	0.18	-0.1
3,398,424	+		Psyr_2824	0.38	-2.4
3,398,428	-		Psyr_2824	0.39	-1.2
3,398,433	+		Psyr_2824	0.39	-1.2
3,398,451	-		Psyr_2824	0.42	-0.1
3,398,488	-		Psyr_2824	0.46	+0.4
3,398,553	+		Psyr_2824	0.55	-0.0
3,398,554	-		Psyr_2824	0.55	-1.4
3,398,558	+		Psyr_2824	0.55	-2.7
3,398,628	+		Psyr_2824	0.64	-1.4
3,398,628	+		Psyr_2824	0.64	-1.7
3,398,629	-		Psyr_2824	0.64	+1.6
3,398,730	+		Psyr_2824	0.77	-2.4
3,398,730	+		Psyr_2824	0.77	+0.6
3,398,735	-		Psyr_2824	0.78	-1.7
3,398,785	-		Psyr_2824	0.84	-0.0
3,398,785	-		Psyr_2824	0.84	+0.3
3,398,879	-				-1.5
3,398,882	+				-1.0
3,398,883	-				+1.2
3,398,883	-				+0.8
3,398,886	+				+0.3
3,398,890	+				-0.2
3,398,894	+				-0.4
3,398,945	+				-1.4
3,398,946	-				-1.4
3,399,023	+				-0.0
3,399,023	+				-2.1
3,399,078	+				-0.2
3,399,078	+				+0.3
3,399,078	+				+0.4
3,399,078	+				+0.2
3,399,078	+				-0.0
3,399,078	+				+1.0
3,399,079	-				-0.7
3,399,079	-				+0.1
3,399,079	-				-0.9
3,399,079	-				+1.3
3,399,079	-				+1.6
3,399,079	-				-1.2
3,399,079	-				-0.0
3,399,079	-				-0.4
3,399,079	-				-0.3
3,399,101	-				-0.3
3,399,101	-				-0.9
3,399,103	+				-0.2
3,399,103	+				+0.9
3,399,103	+				-0.1
3,399,103	+				-0.0
3,399,104	-				-0.1
3,399,104	-				+0.5
3,399,104	-				-1.4
3,399,315	+		Psyr_2825	0.28	-1.6
3,399,315	+		Psyr_2825	0.28	-2.2
3,399,316	-		Psyr_2825	0.28	+1.4
3,399,316	-		Psyr_2825	0.28	+0.8
3,399,316	-		Psyr_2825	0.28	+0.9
3,399,368	+		Psyr_2825	0.32	+0.6
3,399,405	-		Psyr_2825	0.36	-0.5
3,399,454	+		Psyr_2825	0.40	-0.5
3,399,454	+		Psyr_2825	0.40	+0.4
3,399,455	-		Psyr_2825	0.40	+0.5
3,399,535	+		Psyr_2825	0.47	-0.6
3,399,535	+		Psyr_2825	0.47	-0.7
3,399,535	+		Psyr_2825	0.47	+1.9
3,399,535	+		Psyr_2825	0.47	+0.7
3,399,535	+		Psyr_2825	0.47	+1.2
3,399,535	+		Psyr_2825	0.47	+0.7
3,399,535	+		Psyr_2825	0.47	+0.9
3,399,535	+		Psyr_2825	0.47	-0.0
3,399,535	+		Psyr_2825	0.47	+0.4
3,399,535	+		Psyr_2825	0.47	-1.0
3,399,535	+		Psyr_2825	0.47	-0.6
3,399,535	+		Psyr_2825	0.47	-0.6
3,399,535	+		Psyr_2825	0.47	-1.6
3,399,535	+		Psyr_2825	0.47	+0.8
3,399,535	+		Psyr_2825	0.47	-0.7
3,399,535	+		Psyr_2825	0.47	-0.2
3,399,536	-		Psyr_2825	0.47	+0.6
3,399,536	-		Psyr_2825	0.47	-0.2
3,399,536	-		Psyr_2825	0.47	+0.2
3,399,536	-		Psyr_2825	0.47	+0.3
3,399,536	-		Psyr_2825	0.47	-0.7
3,399,536	-		Psyr_2825	0.47	+0.6
3,399,536	-		Psyr_2825	0.47	+0.3
3,399,536	-		Psyr_2825	0.47	-0.3
3,399,536	-		Psyr_2825	0.47	-0.3
3,399,536	-		Psyr_2825	0.47	+1.8
3,399,536	-		Psyr_2825	0.47	+0.4
3,399,536	-		Psyr_2825	0.47	+0.0
3,399,536	-		Psyr_2825	0.47	-0.8
3,399,565	+		Psyr_2825	0.50	+0.6
3,399,565	+		Psyr_2825	0.50	+1.6
3,399,565	+		Psyr_2825	0.50	-0.6
3,399,565	+		Psyr_2825	0.50	-0.0
3,399,565	+		Psyr_2825	0.50	+1.6
3,399,566	-		Psyr_2825	0.50	-1.0
3,399,566	-		Psyr_2825	0.50	-1.7
3,399,566	-		Psyr_2825	0.50	+0.6
3,399,566	-		Psyr_2825	0.50	-0.6
3,399,566	-		Psyr_2825	0.50	-0.4
3,399,569	-		Psyr_2825	0.50	-1.7
3,399,569	-		Psyr_2825	0.50	-0.0
3,399,569	-		Psyr_2825	0.50	-0.2
3,399,569	-		Psyr_2825	0.50	+0.3
3,399,569	-		Psyr_2825	0.50	-0.7
3,399,675	+		Psyr_2825	0.60	-1.4
3,399,675	+		Psyr_2825	0.60	-1.4
3,399,675	+		Psyr_2825	0.60	+0.4
3,399,676	-		Psyr_2825	0.60	-0.8
3,399,676	-		Psyr_2825	0.60	+1.1
3,399,702	+		Psyr_2825	0.62	+0.3