Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2823

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,396,599	+		Psyr_2821	0.89	+0.2
3,396,600	-		Psyr_2821	0.90	-0.1
3,396,600	-		Psyr_2821	0.90	+0.8
3,396,600	-		Psyr_2821	0.90	+2.3
3,396,600	-		Psyr_2821	0.90	-0.6
3,396,600	-		Psyr_2821	0.90	-1.2
3,396,868	-		Psyr_2822	0.27	+1.5
3,396,938	+		Psyr_2822	0.46	+1.3
3,396,938	+		Psyr_2822	0.46	-0.4
3,396,962	+		Psyr_2822	0.53	-0.2
3,396,962	+		Psyr_2822	0.53	-0.3
3,396,962	+		Psyr_2822	0.53	+0.1
3,396,963	-		Psyr_2822	0.53	+0.3
3,396,963	-		Psyr_2822	0.53	+0.7
3,397,094	+		Psyr_2822	0.89	+0.4
3,397,094	+		Psyr_2822	0.89	+0.0
3,397,106	+				-0.4
3,397,211	+				+0.4
3,397,558	+		Psyr_2823	0.90	-0.7
3,397,559	-				+1.0
3,397,616	+				-1.7
3,397,617	-				+0.6
3,397,617	-				+0.6
3,397,617	-				+1.5
3,397,617	-				-0.5
3,397,617	-				-1.2
3,397,621	-				-0.7
3,397,664	+				-0.2
3,397,664	+				-0.4
3,397,664	+				-0.7
3,397,664	+				-0.4
3,397,665	-				+0.6
3,397,721	+				-1.5
3,397,757	-				+0.6
3,397,821	+				-2.7
3,397,822	-				+1.7
3,397,852	+				+0.6
3,397,853	-				-0.2
3,397,975	-				+0.6
3,398,122	-				+1.3
3,398,154	+				-2.6
3,398,181	+				+0.6
3,398,244	+		Psyr_2824	0.15	-2.4
3,398,262	+		Psyr_2824	0.17	-1.7
3,398,263	-		Psyr_2824	0.18	-1.4
3,398,263	-		Psyr_2824	0.18	-2.0
3,398,263	-		Psyr_2824	0.18	-0.1
3,398,424	+		Psyr_2824	0.38	-2.4
3,398,428	-		Psyr_2824	0.39	-1.2
3,398,433	+		Psyr_2824	0.39	-1.2
3,398,451	-		Psyr_2824	0.42	-0.1
3,398,488	-		Psyr_2824	0.46	+0.4
3,398,553	+		Psyr_2824	0.55	-0.0
3,398,554	-		Psyr_2824	0.55	-1.4
3,398,558	+		Psyr_2824	0.55	-2.7