Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2807

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2805 and Psyr_2806 overlap by 4 nucleotidesPsyr_2806 and Psyr_2807 overlap by 1 nucleotidesPsyr_2807 and Psyr_2808 are separated by 90 nucleotidesPsyr_2808 and Psyr_2809 overlap by 4 nucleotides Psyr_2805: Psyr_2805 - hypothetical protein, at 3,383,546 to 3,384,127 _2805 Psyr_2806: Psyr_2806 - Bacteriophage Lambda NinG, at 3,384,124 to 3,384,708 _2806 Psyr_2807: Psyr_2807 - NinB, at 3,384,708 to 3,385,106 _2807 Psyr_2808: Psyr_2808 - hypothetical protein, at 3,385,197 to 3,385,478 _2808 Psyr_2809: Psyr_2809 - hypothetical protein, at 3,385,475 to 3,386,272 _2809 Position (kb) 3384 3385 3386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3383.769 kb on + strand, within Psyr_2805at 3383.769 kb on + strand, within Psyr_2805at 3383.769 kb on + strand, within Psyr_2805at 3383.769 kb on + strand, within Psyr_2805at 3383.770 kb on - strand, within Psyr_2805at 3383.770 kb on - strand, within Psyr_2805at 3383.770 kb on - strand, within Psyr_2805at 3383.786 kb on + strand, within Psyr_2805at 3383.787 kb on - strand, within Psyr_2805at 3383.802 kb on + strand, within Psyr_2805at 3383.802 kb on + strand, within Psyr_2805at 3383.802 kb on + strand, within Psyr_2805at 3383.851 kb on + strand, within Psyr_2805at 3383.851 kb on + strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.852 kb on - strand, within Psyr_2805at 3383.913 kb on + strand, within Psyr_2805at 3383.913 kb on + strand, within Psyr_2805at 3383.913 kb on + strand, within Psyr_2805at 3383.913 kb on + strand, within Psyr_2805at 3383.913 kb on + strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.914 kb on - strand, within Psyr_2805at 3383.919 kb on + strand, within Psyr_2805at 3383.919 kb on + strand, within Psyr_2805at 3383.919 kb on + strand, within Psyr_2805at 3383.919 kb on + strandat 3383.919 kb on + strand, within Psyr_2805at 3383.919 kb on + strand, within Psyr_2805at 3383.920 kb on - strand, within Psyr_2805at 3383.920 kb on - strand, within Psyr_2805at 3383.920 kb on - strand, within Psyr_2805at 3383.920 kb on - strand, within Psyr_2805at 3383.936 kb on + strand, within Psyr_2805at 3383.936 kb on + strand, within Psyr_2805at 3383.936 kb on + strand, within Psyr_2805at 3383.989 kb on + strand, within Psyr_2805at 3384.084 kb on + strandat 3384.084 kb on + strandat 3384.084 kb on + strandat 3384.084 kb on + strandat 3384.085 kb on - strandat 3384.085 kb on - strandat 3384.168 kb on - strandat 3384.203 kb on + strand, within Psyr_2806at 3384.203 kb on + strand, within Psyr_2806at 3384.204 kb on - strand, within Psyr_2806at 3384.204 kb on - strand, within Psyr_2806at 3384.204 kb on - strand, within Psyr_2806at 3384.331 kb on + strand, within Psyr_2806at 3384.331 kb on + strand, within Psyr_2806at 3384.332 kb on - strand, within Psyr_2806at 3384.332 kb on - strand, within Psyr_2806at 3384.332 kb on - strand, within Psyr_2806at 3384.381 kb on - strand, within Psyr_2806at 3385.021 kb on - strand, within Psyr_2807at 3385.021 kb on - strand, within Psyr_2807at 3385.083 kb on - strandat 3385.083 kb on - strandat 3385.301 kb on + strand, within Psyr_2808at 3385.301 kb on + strand, within Psyr_2808at 3385.302 kb on - strand, within Psyr_2808at 3385.305 kb on - strand, within Psyr_2808at 3385.734 kb on + strand, within Psyr_2809at 3385.735 kb on - strand, within Psyr_2809at 3385.735 kb on - strand, within Psyr_2809at 3385.878 kb on + strand, within Psyr_2809at 3385.879 kb on - strand, within Psyr_2809at 3385.970 kb on - strand, within Psyr_2809

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,383,769 + Psyr_2805 0.38 -0.4
3,383,769 + Psyr_2805 0.38 -0.2
3,383,769 + Psyr_2805 0.38 -0.9
3,383,769 + Psyr_2805 0.38 -0.4
3,383,770 - Psyr_2805 0.38 +0.8
3,383,770 - Psyr_2805 0.38 -1.4
3,383,770 - Psyr_2805 0.38 +1.0
3,383,786 + Psyr_2805 0.41 -0.1
3,383,787 - Psyr_2805 0.41 -0.1
3,383,802 + Psyr_2805 0.44 -0.7
3,383,802 + Psyr_2805 0.44 -2.4
3,383,802 + Psyr_2805 0.44 +0.9
3,383,851 + Psyr_2805 0.52 +0.1
3,383,851 + Psyr_2805 0.52 -1.4
3,383,852 - Psyr_2805 0.53 +1.0
3,383,852 - Psyr_2805 0.53 +0.1
3,383,852 - Psyr_2805 0.53 +0.6
3,383,852 - Psyr_2805 0.53 +1.2
3,383,852 - Psyr_2805 0.53 +1.9
3,383,852 - Psyr_2805 0.53 +0.2
3,383,913 + Psyr_2805 0.63 -0.2
3,383,913 + Psyr_2805 0.63 -1.3
3,383,913 + Psyr_2805 0.63 -0.4
3,383,913 + Psyr_2805 0.63 -0.4
3,383,913 + Psyr_2805 0.63 +0.8
3,383,914 - Psyr_2805 0.63 +0.2
3,383,914 - Psyr_2805 0.63 +0.8
3,383,914 - Psyr_2805 0.63 -0.6
3,383,914 - Psyr_2805 0.63 +0.3
3,383,914 - Psyr_2805 0.63 -0.3
3,383,914 - Psyr_2805 0.63 +1.7
3,383,914 - Psyr_2805 0.63 -0.6
3,383,914 - Psyr_2805 0.63 -1.2
3,383,919 + Psyr_2805 0.64 -0.8
3,383,919 + Psyr_2805 0.64 +0.6
3,383,919 + Psyr_2805 0.64 +0.2
3,383,919 + +0.6
3,383,919 + Psyr_2805 0.64 -0.3
3,383,919 + Psyr_2805 0.64 -2.2
3,383,920 - Psyr_2805 0.64 -0.2
3,383,920 - Psyr_2805 0.64 -1.4
3,383,920 - Psyr_2805 0.64 -0.3
3,383,920 - Psyr_2805 0.64 +0.4
3,383,936 + Psyr_2805 0.67 -1.9
3,383,936 + Psyr_2805 0.67 +0.6
3,383,936 + Psyr_2805 0.67 +0.1
3,383,989 + Psyr_2805 0.76 -1.4
3,384,084 + -0.9
3,384,084 + -0.6
3,384,084 + +0.0
3,384,084 + -1.0
3,384,085 - -0.2
3,384,085 - -2.9
3,384,168 - +0.1
3,384,203 + Psyr_2806 0.14 -0.6
3,384,203 + Psyr_2806 0.14 +0.1
3,384,204 - Psyr_2806 0.14 -0.6
3,384,204 - Psyr_2806 0.14 +0.6
3,384,204 - Psyr_2806 0.14 +1.1
3,384,331 + Psyr_2806 0.35 -0.0
3,384,331 + Psyr_2806 0.35 +2.5
3,384,332 - Psyr_2806 0.36 -0.2
3,384,332 - Psyr_2806 0.36 -0.6
3,384,332 - Psyr_2806 0.36 -0.4
3,384,381 - Psyr_2806 0.44 -0.1
3,385,021 - Psyr_2807 0.78 +1.2
3,385,021 - Psyr_2807 0.78 +1.7
3,385,083 - +1.5
3,385,083 - -2.4
3,385,301 + Psyr_2808 0.37 -1.4
3,385,301 + Psyr_2808 0.37 -1.3
3,385,302 - Psyr_2808 0.37 -1.2
3,385,305 - Psyr_2808 0.38 +0.6
3,385,734 + Psyr_2809 0.32 -0.9
3,385,735 - Psyr_2809 0.33 +0.2
3,385,735 - Psyr_2809 0.33 -0.2
3,385,878 + Psyr_2809 0.51 +0.5
3,385,879 - Psyr_2809 0.51 +0.3
3,385,970 - Psyr_2809 0.62 +0.1

Or see this region's nucleotide sequence