Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2779

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2777 and Psyr_2778 are separated by 2 nucleotidesPsyr_2778 and Psyr_2779 are separated by 9 nucleotidesPsyr_2779 and Psyr_2780 are separated by 2 nucleotides Psyr_2777: Psyr_2777 - NLP/P60, at 3,363,125 to 3,363,889 _2777 Psyr_2778: Psyr_2778 - Phage minor tail protein L, at 3,363,892 to 3,364,641 _2778 Psyr_2779: Psyr_2779 - Phage minor tail, at 3,364,651 to 3,364,989 _2779 Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477 _2780 Position (kb) 3364 3365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3363.789 kb on + strand, within Psyr_2777at 3363.789 kb on + strand, within Psyr_2777at 3363.789 kb on + strand, within Psyr_2777at 3363.879 kb on + strandat 3363.879 kb on + strandat 3363.880 kb on - strandat 3363.937 kb on + strandat 3363.937 kb on + strandat 3363.938 kb on - strandat 3363.938 kb on - strandat 3364.041 kb on - strand, within Psyr_2778at 3364.203 kb on - strand, within Psyr_2778at 3364.228 kb on - strand, within Psyr_2778at 3364.275 kb on - strand, within Psyr_2778at 3364.275 kb on - strand, within Psyr_2778at 3364.288 kb on - strand, within Psyr_2778at 3364.299 kb on + strand, within Psyr_2778at 3364.443 kb on - strand, within Psyr_2778at 3364.693 kb on + strand, within Psyr_2779at 3364.693 kb on + strand, within Psyr_2779at 3364.825 kb on - strand, within Psyr_2779at 3364.899 kb on - strand, within Psyr_2779at 3364.899 kb on - strand, within Psyr_2779at 3364.962 kb on + strandat 3364.971 kb on + strandat 3364.989 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.993 kb on + strandat 3364.994 kb on - strandat 3364.994 kb on - strandat 3364.994 kb on - strandat 3365.173 kb on + strandat 3365.174 kb on - strandat 3365.174 kb on - strandat 3365.189 kb on + strandat 3365.437 kb on + strand, within Psyr_2780at 3365.471 kb on + strand, within Psyr_2780at 3365.471 kb on + strand, within Psyr_2780at 3365.472 kb on - strand, within Psyr_2780at 3365.521 kb on + strand, within Psyr_2780at 3365.522 kb on - strand, within Psyr_2780at 3365.522 kb on - strand, within Psyr_2780at 3365.538 kb on + strand, within Psyr_2780at 3365.539 kb on - strand, within Psyr_2780at 3365.734 kb on + strand, within Psyr_2780at 3365.734 kb on + strand, within Psyr_2780at 3365.734 kb on + strand, within Psyr_2780at 3365.735 kb on - strand, within Psyr_2780at 3365.735 kb on - strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.791 kb on + strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.792 kb on - strand, within Psyr_2780at 3365.797 kb on + strand, within Psyr_2780at 3365.797 kb on + strand, within Psyr_2780at 3365.797 kb on + strand, within Psyr_2780at 3365.798 kb on - strand, within Psyr_2780at 3365.798 kb on - strand, within Psyr_2780at 3365.798 kb on - strand, within Psyr_2780at 3365.864 kb on - strand, within Psyr_2780at 3365.864 kb on - strand, within Psyr_2780at 3365.864 kb on - strand, within Psyr_2780at 3365.943 kb on + strand, within Psyr_2780at 3365.944 kb on - strand, within Psyr_2780

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,363,789 + Psyr_2777 0.87 -1.2
3,363,789 + Psyr_2777 0.87 -1.0
3,363,789 + Psyr_2777 0.87 +2.4
3,363,879 + -0.3
3,363,879 + -0.3
3,363,880 - +0.2
3,363,937 + -1.7
3,363,937 + -0.4
3,363,938 - +1.6
3,363,938 - -0.0
3,364,041 - Psyr_2778 0.20 +1.6
3,364,203 - Psyr_2778 0.41 -1.0
3,364,228 - Psyr_2778 0.45 +0.9
3,364,275 - Psyr_2778 0.51 -0.2
3,364,275 - Psyr_2778 0.51 +0.4
3,364,288 - Psyr_2778 0.53 -0.3
3,364,299 + Psyr_2778 0.54 +0.3
3,364,443 - Psyr_2778 0.73 +0.2
3,364,693 + Psyr_2779 0.12 -2.0
3,364,693 + Psyr_2779 0.12 -0.9
3,364,825 - Psyr_2779 0.51 -1.0
3,364,899 - Psyr_2779 0.73 +0.8
3,364,899 - Psyr_2779 0.73 -0.4
3,364,962 + -1.1
3,364,971 + -0.4
3,364,989 + +0.3
3,364,993 + +0.7
3,364,993 + -1.5
3,364,993 + +0.1
3,364,993 + +0.6
3,364,993 + +0.6
3,364,993 + +1.3
3,364,993 + -0.4
3,364,994 - +0.6
3,364,994 - +0.6
3,364,994 - +0.8
3,365,173 + -0.4
3,365,174 - -2.4
3,365,174 - +0.4
3,365,189 + +0.9
3,365,437 + Psyr_2780 0.13 -0.8
3,365,471 + Psyr_2780 0.14 +3.8
3,365,471 + Psyr_2780 0.14 -1.2
3,365,472 - Psyr_2780 0.14 -0.3
3,365,521 + Psyr_2780 0.15 -0.3
3,365,522 - Psyr_2780 0.15 +1.0
3,365,522 - Psyr_2780 0.15 +1.1
3,365,538 + Psyr_2780 0.16 -0.6
3,365,539 - Psyr_2780 0.16 +0.4
3,365,734 + Psyr_2780 0.21 +1.6
3,365,734 + Psyr_2780 0.21 -0.4
3,365,734 + Psyr_2780 0.21 -1.6
3,365,735 - Psyr_2780 0.21 -0.4
3,365,735 - Psyr_2780 0.21 +1.0
3,365,791 + Psyr_2780 0.23 +0.6
3,365,791 + Psyr_2780 0.23 -0.9
3,365,791 + Psyr_2780 0.23 -1.6
3,365,791 + Psyr_2780 0.23 -0.1
3,365,791 + Psyr_2780 0.23 -0.3
3,365,791 + Psyr_2780 0.23 -0.1
3,365,791 + Psyr_2780 0.23 -3.4
3,365,791 + Psyr_2780 0.23 +0.0
3,365,791 + Psyr_2780 0.23 -0.8
3,365,791 + Psyr_2780 0.23 -0.4
3,365,792 - Psyr_2780 0.23 +0.4
3,365,792 - Psyr_2780 0.23 +1.4
3,365,792 - Psyr_2780 0.23 +0.4
3,365,792 - Psyr_2780 0.23 +0.6
3,365,792 - Psyr_2780 0.23 -0.1
3,365,792 - Psyr_2780 0.23 -1.6
3,365,792 - Psyr_2780 0.23 -0.1
3,365,792 - Psyr_2780 0.23 +1.3
3,365,792 - Psyr_2780 0.23 +0.0
3,365,792 - Psyr_2780 0.23 +0.1
3,365,797 + Psyr_2780 0.23 +0.1
3,365,797 + Psyr_2780 0.23 +0.6
3,365,797 + Psyr_2780 0.23 +0.3
3,365,798 - Psyr_2780 0.23 +2.6
3,365,798 - Psyr_2780 0.23 +0.1
3,365,798 - Psyr_2780 0.23 -0.9
3,365,864 - Psyr_2780 0.25 +0.7
3,365,864 - Psyr_2780 0.25 +0.3
3,365,864 - Psyr_2780 0.25 +0.6
3,365,943 + Psyr_2780 0.27 -0.5
3,365,944 - Psyr_2780 0.27 -1.7

Or see this region's nucleotide sequence