Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2714

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2713 and Psyr_2714 are separated by 138 nucleotidesPsyr_2714 and Psyr_2715 are separated by 388 nucleotides Psyr_2713: Psyr_2713 - transcriptional regulator, LysR family, at 3,295,137 to 3,296,036 _2713 Psyr_2714: Psyr_2714 - putative transmembrane protein, at 3,296,175 to 3,296,639 _2714 Psyr_2715: Psyr_2715 - Major facilitator superfamily, at 3,297,028 to 3,298,422 _2715 Position (kb) 3296 3297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3295.378 kb on + strand, within Psyr_2713at 3295.378 kb on + strand, within Psyr_2713at 3295.379 kb on - strandat 3295.379 kb on - strand, within Psyr_2713at 3295.409 kb on + strand, within Psyr_2713at 3295.453 kb on + strand, within Psyr_2713at 3295.453 kb on + strand, within Psyr_2713at 3295.454 kb on - strand, within Psyr_2713at 3295.571 kb on - strand, within Psyr_2713at 3295.614 kb on - strand, within Psyr_2713at 3295.645 kb on + strand, within Psyr_2713at 3295.645 kb on + strand, within Psyr_2713at 3295.645 kb on + strand, within Psyr_2713at 3295.645 kb on + strand, within Psyr_2713at 3295.646 kb on - strand, within Psyr_2713at 3295.646 kb on - strand, within Psyr_2713at 3295.646 kb on - strand, within Psyr_2713at 3295.646 kb on - strand, within Psyr_2713at 3295.649 kb on + strand, within Psyr_2713at 3295.649 kb on + strand, within Psyr_2713at 3295.650 kb on - strand, within Psyr_2713at 3295.650 kb on - strand, within Psyr_2713at 3295.650 kb on - strand, within Psyr_2713at 3295.650 kb on - strand, within Psyr_2713at 3295.727 kb on - strand, within Psyr_2713at 3295.921 kb on - strand, within Psyr_2713at 3296.077 kb on - strandat 3296.077 kb on - strandat 3296.082 kb on - strandat 3296.082 kb on - strandat 3296.082 kb on - strandat 3296.082 kb on - strandat 3296.137 kb on - strandat 3296.173 kb on + strandat 3296.174 kb on - strandat 3296.174 kb on - strandat 3296.174 kb on - strandat 3296.187 kb on - strandat 3296.187 kb on - strandat 3296.187 kb on - strandat 3296.210 kb on + strandat 3296.265 kb on - strand, within Psyr_2714at 3296.268 kb on + strand, within Psyr_2714at 3296.268 kb on + strand, within Psyr_2714at 3296.268 kb on + strand, within Psyr_2714at 3296.269 kb on - strand, within Psyr_2714at 3296.369 kb on + strand, within Psyr_2714at 3296.369 kb on + strand, within Psyr_2714at 3296.370 kb on - strand, within Psyr_2714at 3296.453 kb on - strand, within Psyr_2714at 3296.453 kb on - strand, within Psyr_2714at 3296.484 kb on + strand, within Psyr_2714at 3296.484 kb on + strand, within Psyr_2714at 3296.521 kb on + strand, within Psyr_2714at 3296.521 kb on + strand, within Psyr_2714at 3296.521 kb on + strand, within Psyr_2714at 3296.521 kb on + strand, within Psyr_2714at 3296.522 kb on - strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.525 kb on + strand, within Psyr_2714at 3296.526 kb on - strand, within Psyr_2714at 3296.549 kb on + strand, within Psyr_2714at 3296.550 kb on - strand, within Psyr_2714at 3296.615 kb on - strandat 3296.615 kb on - strandat 3296.627 kb on + strandat 3296.627 kb on + strandat 3296.628 kb on - strandat 3296.628 kb on - strandat 3296.691 kb on + strandat 3296.692 kb on - strandat 3296.692 kb on - strandat 3296.696 kb on - strandat 3296.696 kb on - strandat 3296.699 kb on + strandat 3296.699 kb on + strandat 3296.700 kb on - strandat 3296.700 kb on - strandat 3296.700 kb on - strandat 3296.721 kb on - strandat 3296.733 kb on - strandat 3296.788 kb on - strandat 3296.895 kb on + strandat 3296.895 kb on + strandat 3296.895 kb on + strandat 3296.895 kb on + strandat 3296.896 kb on - strandat 3296.896 kb on - strandat 3296.896 kb on - strandat 3296.932 kb on - strandat 3296.989 kb on - strandat 3297.064 kb on - strandat 3297.066 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.151 kb on + strandat 3297.152 kb on - strandat 3297.180 kb on - strand, within Psyr_2715at 3297.388 kb on + strand, within Psyr_2715at 3297.389 kb on - strand, within Psyr_2715at 3297.389 kb on - strand, within Psyr_2715at 3297.445 kb on + strand, within Psyr_2715at 3297.445 kb on + strand, within Psyr_2715at 3297.445 kb on + strand, within Psyr_2715at 3297.445 kb on + strand, within Psyr_2715at 3297.446 kb on - strand, within Psyr_2715at 3297.446 kb on - strand, within Psyr_2715at 3297.446 kb on - strand, within Psyr_2715at 3297.446 kb on - strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.448 kb on + strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715at 3297.449 kb on - strand, within Psyr_2715

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,295,378 + Psyr_2713 0.27 -1.0
3,295,378 + Psyr_2713 0.27 -0.4
3,295,379 - -0.7
3,295,379 - Psyr_2713 0.27 -0.1
3,295,409 + Psyr_2713 0.30 -1.4
3,295,453 + Psyr_2713 0.35 +0.3
3,295,453 + Psyr_2713 0.35 -0.1
3,295,454 - Psyr_2713 0.35 +0.2
3,295,571 - Psyr_2713 0.48 -0.1
3,295,614 - Psyr_2713 0.53 -2.6
3,295,645 + Psyr_2713 0.56 +0.3
3,295,645 + Psyr_2713 0.56 -0.2
3,295,645 + Psyr_2713 0.56 +0.1
3,295,645 + Psyr_2713 0.56 +0.0
3,295,646 - Psyr_2713 0.57 -0.6
3,295,646 - Psyr_2713 0.57 +1.3
3,295,646 - Psyr_2713 0.57 +0.9
3,295,646 - Psyr_2713 0.57 +1.5
3,295,649 + Psyr_2713 0.57 -0.5
3,295,649 + Psyr_2713 0.57 +0.5
3,295,650 - Psyr_2713 0.57 +1.2
3,295,650 - Psyr_2713 0.57 +0.6
3,295,650 - Psyr_2713 0.57 -3.2
3,295,650 - Psyr_2713 0.57 -0.4
3,295,727 - Psyr_2713 0.66 +0.7
3,295,921 - Psyr_2713 0.87 -0.7
3,296,077 - -2.0
3,296,077 - -0.1
3,296,082 - -0.0
3,296,082 - -0.4
3,296,082 - +0.4
3,296,082 - -1.5
3,296,137 - +0.1
3,296,173 + -1.7
3,296,174 - +0.8
3,296,174 - +0.3
3,296,174 - -0.7
3,296,187 - -0.5
3,296,187 - +0.2
3,296,187 - +0.8
3,296,210 + -2.0
3,296,265 - Psyr_2714 0.19 -0.6
3,296,268 + Psyr_2714 0.20 -2.6
3,296,268 + Psyr_2714 0.20 -0.4
3,296,268 + Psyr_2714 0.20 -2.9
3,296,269 - Psyr_2714 0.20 -0.5
3,296,369 + Psyr_2714 0.42 -2.4
3,296,369 + Psyr_2714 0.42 +0.2
3,296,370 - Psyr_2714 0.42 -1.5
3,296,453 - Psyr_2714 0.60 +0.3
3,296,453 - Psyr_2714 0.60 +0.5
3,296,484 + Psyr_2714 0.66 +1.4
3,296,484 + Psyr_2714 0.66 +1.9
3,296,521 + Psyr_2714 0.74 -0.9
3,296,521 + Psyr_2714 0.74 +1.1
3,296,521 + Psyr_2714 0.74 -0.2
3,296,521 + Psyr_2714 0.74 +0.3
3,296,522 - Psyr_2714 0.75 -0.7
3,296,525 + Psyr_2714 0.75 +0.2
3,296,525 + Psyr_2714 0.75 -1.3
3,296,525 + Psyr_2714 0.75 -0.6
3,296,525 + Psyr_2714 0.75 +0.9
3,296,525 + Psyr_2714 0.75 -2.4
3,296,525 + Psyr_2714 0.75 -0.4
3,296,526 - Psyr_2714 0.75 +0.6
3,296,549 + Psyr_2714 0.80 -0.9
3,296,550 - Psyr_2714 0.81 -0.1
3,296,615 - -1.9
3,296,615 - +1.2
3,296,627 + -0.9
3,296,627 + -0.5
3,296,628 - +1.0
3,296,628 - -0.4
3,296,691 + -0.4
3,296,692 - -0.3
3,296,692 - -0.4
3,296,696 - +0.2
3,296,696 - +1.6
3,296,699 + -0.9
3,296,699 + -1.2
3,296,700 - +0.6
3,296,700 - -1.7
3,296,700 - +1.3
3,296,721 - +0.3
3,296,733 - +0.0
3,296,788 - +1.2
3,296,895 + +1.9
3,296,895 + -1.1
3,296,895 + -0.9
3,296,895 + +0.4
3,296,896 - -0.7
3,296,896 - +0.0
3,296,896 - -1.0
3,296,932 - +1.6
3,296,989 - +2.1
3,297,064 - -0.4
3,297,066 + -0.8
3,297,151 + +0.0
3,297,151 + +0.3
3,297,151 + -1.4
3,297,151 + +1.6
3,297,151 + -0.6
3,297,151 + +1.8
3,297,151 + +0.9
3,297,152 - -2.4
3,297,180 - Psyr_2715 0.11 -2.1
3,297,388 + Psyr_2715 0.26 -0.1
3,297,389 - Psyr_2715 0.26 -0.4
3,297,389 - Psyr_2715 0.26 -1.6
3,297,445 + Psyr_2715 0.30 +0.6
3,297,445 + Psyr_2715 0.30 +1.4
3,297,445 + Psyr_2715 0.30 +1.9
3,297,445 + Psyr_2715 0.30 -0.5
3,297,446 - Psyr_2715 0.30 +0.9
3,297,446 - Psyr_2715 0.30 -0.3
3,297,446 - Psyr_2715 0.30 -0.2
3,297,446 - Psyr_2715 0.30 -2.2
3,297,448 + Psyr_2715 0.30 -1.1
3,297,448 + Psyr_2715 0.30 -1.9
3,297,448 + Psyr_2715 0.30 -0.3
3,297,448 + Psyr_2715 0.30 -0.1
3,297,448 + Psyr_2715 0.30 +0.2
3,297,448 + Psyr_2715 0.30 -1.3
3,297,448 + Psyr_2715 0.30 +2.0
3,297,448 + Psyr_2715 0.30 -0.2
3,297,449 - Psyr_2715 0.30 -0.1
3,297,449 - Psyr_2715 0.30 +0.9
3,297,449 - Psyr_2715 0.30 -0.4
3,297,449 - Psyr_2715 0.30 +0.4
3,297,449 - Psyr_2715 0.30 +1.1
3,297,449 - Psyr_2715 0.30 +0.1
3,297,449 - Psyr_2715 0.30 +0.5

Or see this region's nucleotide sequence