Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2698

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,274,834	-		Psyr_2697	0.66	+0.6
3,275,047	+		Psyr_2697	0.80	-2.9
3,275,047	+		Psyr_2697	0.80	-0.8
3,275,348	+				-1.4
3,275,348	+				+0.5
3,275,348	+				-0.8
3,275,348	+				-0.3
3,275,349	-				-1.1
3,275,349	-				+0.6
3,275,349	-				-0.3
3,275,401	+				+1.3
3,275,401	+				+1.2
3,275,401	+				+1.6
3,275,402	-				+1.2
3,275,402	-				-0.6
3,275,402	-				-0.3
3,275,402	-				-2.7
3,275,403	+				+0.6
3,275,403	+				+1.9
3,275,403	+				+0.6
3,275,403	+				-1.2
3,275,404	-				+0.6
3,275,404	-				-0.8
3,275,404	-				-1.2
3,275,404	-				+0.6
3,275,404	-				-3.4
3,275,404	-				+1.6
3,275,404	-				-0.1
3,275,404	-				-2.1
3,275,404	-				+1.6
3,275,571	+				+0.6
3,275,571	+				-0.4
3,275,598	+				-0.4
3,275,599	-				+0.6
3,275,605	-				+0.8
3,275,605	-				+0.3
3,275,694	+				+0.2
3,275,695	-				-1.0
3,275,696	+				-0.1
3,275,780	+				-0.4
3,275,781	-				+1.9
3,275,781	-				+1.9
3,275,781	-				-0.7
3,275,899	-				-0.4
3,275,899	-				+1.0
3,275,899	-				+0.0
3,275,975	+				-2.2
3,276,084	-		Psyr_2698	0.14	-0.1
3,276,139	+		Psyr_2698	0.16	+0.1
3,276,140	-		Psyr_2698	0.16	-0.7
3,276,143	+		Psyr_2698	0.16	+0.0
3,276,143	+		Psyr_2698	0.16	-0.2
3,276,144	-		Psyr_2698	0.16	+0.1
3,276,144	-		Psyr_2698	0.16	+1.8
3,276,156	+		Psyr_2698	0.17	-1.4
3,276,167	-		Psyr_2698	0.17	-0.7
3,276,170	+		Psyr_2698	0.17	-1.4
3,276,170	+		Psyr_2698	0.17	-0.6
3,276,201	+		Psyr_2698	0.18	+0.1
3,276,202	-		Psyr_2698	0.18	-2.6
3,276,271	+		Psyr_2698	0.21	-1.5
3,276,328	-		Psyr_2698	0.24	-0.7
3,276,393	-		Psyr_2698	0.26	-1.7
3,276,393	-		Psyr_2698	0.26	+0.9
3,276,462	+		Psyr_2698	0.29	+1.0
3,276,501	-		Psyr_2698	0.31	-1.0
3,276,561	-		Psyr_2698	0.33	-1.4
3,276,562	+		Psyr_2698	0.33	+0.1
3,276,583	+		Psyr_2698	0.34	+0.1
3,276,584	-		Psyr_2698	0.34	-3.0
3,276,587	+		Psyr_2698	0.34	-2.3
3,276,587	+		Psyr_2698	0.34	-1.0
3,276,587	+		Psyr_2698	0.34	-2.2
3,276,588	-		Psyr_2698	0.34	-1.7
3,276,588	-		Psyr_2698	0.34	-0.9
3,276,591	+		Psyr_2698	0.35	+0.4
3,276,592	-		Psyr_2698	0.35	-2.1
3,276,592	-		Psyr_2698	0.35	-1.1
3,276,869	-		Psyr_2698	0.46	-0.9
3,276,869	-		Psyr_2698	0.46	-0.5
3,276,920	+		Psyr_2698	0.48	-0.8
3,276,945	+		Psyr_2698	0.49	-0.2
3,276,945	+		Psyr_2698	0.49	-1.8
3,276,946	-		Psyr_2698	0.49	-1.2
3,276,946	-		Psyr_2698	0.49	+0.2
3,277,110	+		Psyr_2698	0.56	+0.1
3,277,111	-		Psyr_2698	0.56	-3.3
3,277,145	+		Psyr_2698	0.58	-0.3
3,277,288	-		Psyr_2698	0.64	-2.0
3,277,345	-		Psyr_2698	0.66	-0.2
3,277,378	+		Psyr_2698	0.67	+1.2
3,277,379	-		Psyr_2698	0.67	+2.3
3,277,383	-		Psyr_2698	0.67	-0.4
3,277,383	-		Psyr_2698	0.67	+0.0
3,277,388	+		Psyr_2698	0.68	-1.0
3,277,388	+		Psyr_2698	0.68	+0.6
3,277,389	-		Psyr_2698	0.68	-1.7
3,277,468	+		Psyr_2698	0.71	+1.4
3,277,513	+		Psyr_2698	0.73	+0.6
3,277,609	+		Psyr_2698	0.77	-0.6
3,277,610	-		Psyr_2698	0.77	+0.0
3,277,667	+		Psyr_2698	0.79	-0.8
3,277,668	-		Psyr_2698	0.79	-1.0
3,277,668	-		Psyr_2698	0.79	-0.7
3,277,674	-		Psyr_2698	0.80	-0.1
3,277,674	-		Psyr_2698	0.80	-1.4
3,277,730	+		Psyr_2698	0.82	+0.3
3,277,730	+		Psyr_2698	0.82	-2.2
3,277,730	+		Psyr_2698	0.82	-0.3
3,277,730	+		Psyr_2698	0.82	+0.6
3,277,731	-		Psyr_2698	0.82	-1.4
3,277,731	-		Psyr_2698	0.82	-0.8
3,277,731	-		Psyr_2698	0.82	-2.2
3,277,731	-		Psyr_2698	0.82	-1.4
3,277,731	-		Psyr_2698	0.82	-1.3
3,277,731	-		Psyr_2698	0.82	-0.2
3,277,731	-		Psyr_2698	0.82	-1.8
3,277,731	-				-0.4
3,277,731	-		Psyr_2698	0.82	-1.6
3,277,731	-		Psyr_2698	0.82	-0.7
3,277,733	-		Psyr_2698	0.82	-1.4
3,277,782	+		Psyr_2698	0.84	+0.6
3,277,782	+		Psyr_2698	0.84	-0.0
3,277,795	+		Psyr_2698	0.85	-0.6
3,277,808	+		Psyr_2698	0.85	-0.5
3,277,808	+		Psyr_2698	0.85	-2.2
3,277,809	-		Psyr_2698	0.85	-1.6
3,277,809	-		Psyr_2698	0.85	-2.7
3,277,906	+		Psyr_2698	0.89	+2.2
3,277,956	+				-1.0
3,277,956	+				+0.5
3,277,956	+				+0.2
3,277,956	+				-0.4
3,277,956	+				+0.4
3,277,956	+				+0.3
3,277,956	+				+0.6
3,277,956	+				-1.2
3,277,956	+				+0.2
3,277,956	+				-1.7
3,277,956	+				-0.3
3,277,956	+				-0.6
3,277,956	+				+0.4
3,277,956	+				+0.6
3,277,956	+				-0.4
3,277,956	+				-0.4
3,277,956	+				-1.2
3,277,956	+				-2.4
3,277,956	+				-0.9
3,277,956	+				-1.0
3,277,956	+				+0.0
3,277,956	+				+0.5
3,277,956	+				+1.2
3,277,957	-				-0.3
3,277,957	-				-2.4
3,277,957	-				-2.3
3,277,957	-				-1.0
3,277,957	-				-3.0
3,277,957	-				+0.2
3,277,957	-				-1.5
3,277,957	-				+0.2
3,277,957	-				-2.7
3,277,957	-				-1.4
3,277,957	-				-2.2
3,277,957	-				-3.4
3,277,957	-				-0.4
3,277,957	-				-1.1
3,277,957	-				-2.0
3,277,957	-				-2.1
3,278,011	-				+0.6
3,278,011	-				-1.5
3,278,074	+				-0.1
3,278,123	-				-1.0
3,278,183	+				+1.6
3,278,183	+				+1.0
3,278,184	-				-0.2
3,278,252	-				-0.8
3,278,302	+				-0.7
3,278,305	+				-2.0
3,278,306	-				+0.0
3,278,306	-				+1.8
3,278,362	+				+2.0
3,278,363	-				+2.2
3,278,498	+		Psyr_2699	0.18	+0.6
3,278,498	+		Psyr_2699	0.18	+0.0
3,278,498	+		Psyr_2699	0.18	-0.9
3,278,498	+		Psyr_2699	0.18	-1.4
3,278,498	+		Psyr_2699	0.18	-0.3
3,278,519	+		Psyr_2699	0.20	+0.0
3,278,520	-		Psyr_2699	0.20	+1.2
3,278,520	-		Psyr_2699	0.20	-0.1
3,278,638	-		Psyr_2699	0.32	+1.2
3,278,712	+		Psyr_2699	0.39	-1.0
3,278,713	-		Psyr_2699	0.39	+0.4
3,279,094	+		Psyr_2699	0.76	-0.8
3,279,095	-		Psyr_2699	0.77	+1.9
3,279,095	-		Psyr_2699	0.77	+1.0
3,279,095	-		Psyr_2699	0.77	+0.8
3,279,095	-		Psyr_2699	0.77	-2.2
3,279,095	-		Psyr_2699	0.77	+1.2
3,279,108	+		Psyr_2699	0.78	+0.4
3,279,109	-		Psyr_2699	0.78	+0.6
3,279,162	+		Psyr_2699	0.83	+1.1