Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2662 and Psyr_2663 are separated by 381 nucleotides Psyr_2663 and Psyr_2664 are separated by 144 nucleotides Psyr_2664 and Psyr_2665 are separated by 405 nucleotides
Psyr_2662: Psyr_2662 - hypothetical protein, at 3,232,976 to 3,233,530
_2662
Psyr_2663: Psyr_2663 - hypothetical protein, at 3,233,912 to 3,234,271
_2663
Psyr_2664: Psyr_2664 - hypothetical protein, at 3,234,416 to 3,235,135
_2664
Psyr_2665: Psyr_2665 - Phenazine biosynthesis PhzC/PhzF protein, at 3,235,541 to 3,236,047
_2665
Position (kb) 3234
3235
3236 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3233.469 kb on - strand, within Psyr_2662 at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.520 kb on + strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.521 kb on - strand at 3233.522 kb on + strand at 3233.522 kb on + strand at 3233.523 kb on - strand at 3233.523 kb on - strand at 3233.523 kb on - strand at 3233.523 kb on - strand at 3233.523 kb on - strand at 3233.523 kb on - strand at 3233.622 kb on + strand at 3233.623 kb on - strand at 3233.640 kb on + strand at 3233.641 kb on - strand at 3233.641 kb on - strand at 3233.713 kb on + strand at 3233.714 kb on - strand at 3233.716 kb on + strand at 3233.716 kb on + strand at 3233.716 kb on + strand at 3233.716 kb on + strand at 3233.716 kb on + strand at 3233.717 kb on - strand at 3233.717 kb on - strand at 3233.717 kb on - strand at 3233.717 kb on - strand at 3233.717 kb on - strand at 3233.717 kb on - strand at 3233.722 kb on + strand at 3233.733 kb on + strand at 3233.733 kb on + strand at 3233.733 kb on + strand at 3233.733 kb on + strand at 3233.733 kb on + strand at 3233.763 kb on - strand at 3233.763 kb on - strand at 3233.763 kb on - strand at 3233.775 kb on - strand at 3233.797 kb on + strand at 3233.797 kb on + strand at 3233.814 kb on + strand at 3233.843 kb on + strand at 3233.843 kb on + strand at 3233.843 kb on + strand at 3233.843 kb on + strand at 3233.843 kb on + strand at 3233.843 kb on + strand at 3233.844 kb on - strand at 3233.847 kb on + strand at 3233.847 kb on + strand at 3233.847 kb on + strand at 3233.847 kb on + strand at 3233.847 kb on + strand at 3233.848 kb on - strand at 3233.848 kb on - strand at 3233.848 kb on - strand at 3233.942 kb on + strand at 3233.945 kb on - strand at 3233.945 kb on - strand at 3233.945 kb on - strand at 3233.945 kb on - strand at 3233.945 kb on - strand at 3233.962 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.140 kb on + strand, within Psyr_2663 at 3234.141 kb on - strand, within Psyr_2663 at 3234.141 kb on - strand, within Psyr_2663 at 3234.141 kb on - strand, within Psyr_2663 at 3234.154 kb on + strand, within Psyr_2663 at 3234.192 kb on + strand, within Psyr_2663 at 3234.192 kb on + strand, within Psyr_2663 at 3234.193 kb on - strand, within Psyr_2663 at 3234.225 kb on + strand, within Psyr_2663 at 3234.225 kb on + strand, within Psyr_2663 at 3234.225 kb on + strand, within Psyr_2663 at 3234.229 kb on + strand, within Psyr_2663 at 3234.229 kb on + strand, within Psyr_2663 at 3234.229 kb on + strand, within Psyr_2663 at 3234.230 kb on - strand, within Psyr_2663 at 3234.230 kb on - strand, within Psyr_2663 at 3234.230 kb on - strand, within Psyr_2663 at 3234.230 kb on - strand, within Psyr_2663 at 3234.273 kb on + strand at 3234.273 kb on + strand at 3234.273 kb on + strand at 3234.274 kb on - strand at 3234.274 kb on - strand at 3234.274 kb on - strand at 3234.327 kb on + strand at 3234.384 kb on + strand at 3234.384 kb on + strand at 3234.385 kb on - strand at 3234.385 kb on - strand at 3234.417 kb on + strand at 3234.417 kb on + strand at 3234.418 kb on - strand at 3234.418 kb on - strand at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.587 kb on - strand, within Psyr_2664 at 3234.621 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.673 kb on - strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.692 kb on - strand, within Psyr_2664 at 3234.692 kb on - strand, within Psyr_2664 at 3234.712 kb on + strand, within Psyr_2664 at 3234.712 kb on + strand, within Psyr_2664 at 3234.713 kb on - strand, within Psyr_2664 at 3234.824 kb on - strand, within Psyr_2664 at 3234.872 kb on + strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.874 kb on + strand, within Psyr_2664 at 3234.875 kb on - strand, within Psyr_2664 at 3234.905 kb on - strand, within Psyr_2664 at 3234.953 kb on + strand, within Psyr_2664 at 3234.954 kb on - strand, within Psyr_2664 at 3235.013 kb on + strand, within Psyr_2664 at 3235.014 kb on - strand, within Psyr_2664 at 3235.097 kb on + strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.104 kb on - strand at 3235.104 kb on - strand at 3235.104 kb on - strand at 3235.106 kb on + strand at 3235.130 kb on - strand at 3235.181 kb on + strand at 3235.269 kb on + strand at 3235.269 kb on + strand at 3235.273 kb on + strand at 3235.273 kb on + strand at 3235.274 kb on - strand at 3235.274 kb on - strand at 3235.295 kb on + strand at 3235.296 kb on - strand at 3235.296 kb on - strand at 3235.296 kb on - strand at 3235.357 kb on - strand at 3235.368 kb on + strand at 3235.369 kb on - strand at 3235.369 kb on - strand at 3235.369 kb on - strand at 3235.480 kb on + strand at 3235.480 kb on + strand at 3235.481 kb on - strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.578 kb on - strand at 3235.578 kb on - strand at 3235.588 kb on + strand at 3235.588 kb on + strand at 3235.588 kb on + strand at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.623 kb on + strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.735 kb on + strand, within Psyr_2665 at 3235.735 kb on + strand, within Psyr_2665 at 3235.736 kb on - strand, within Psyr_2665 at 3235.754 kb on - strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.771 kb on - strand, within Psyr_2665 at 3235.797 kb on + strand, within Psyr_2665 at 3235.798 kb on - strand, within Psyr_2665 at 3235.822 kb on + strand, within Psyr_2665 at 3235.899 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.942 kb on + strand, within Psyr_2665 at 3236.123 kb on + strand at 3236.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 3,233,469 - Psyr_2662 0.89 +1.3 3,233,520 + -0.2 3,233,520 + -0.4 3,233,520 + -0.5 3,233,520 + +0.7 3,233,520 + +0.6 3,233,520 + +1.2 3,233,520 + +0.0 3,233,520 + -0.3 3,233,520 + +0.0 3,233,521 - -0.6 3,233,521 - -0.0 3,233,521 - +0.6 3,233,521 - +0.2 3,233,521 - -2.4 3,233,521 - +0.0 3,233,521 - -0.4 3,233,521 - -1.3 3,233,522 + -0.4 3,233,522 + -0.6 3,233,523 - -1.0 3,233,523 - -0.7 3,233,523 - -1.7 3,233,523 - -0.7 3,233,523 - -1.9 3,233,523 - +1.4 3,233,622 + +0.3 3,233,623 - -0.9 3,233,640 + +0.0 3,233,641 - +1.0 3,233,641 - +0.2 3,233,713 + -1.7 3,233,714 - +0.6 3,233,716 + -0.4 3,233,716 + +0.0 3,233,716 + -1.2 3,233,716 + -0.7 3,233,716 + +0.1 3,233,717 - +0.6 3,233,717 - +0.6 3,233,717 - +1.3 3,233,717 - -0.2 3,233,717 - +0.4 3,233,717 - +0.3 3,233,722 + -0.1 3,233,733 + +0.2 3,233,733 + -1.7 3,233,733 + +0.2 3,233,733 + +0.2 3,233,733 + +0.2 3,233,763 - -1.3 3,233,763 - +0.3 3,233,763 - -2.1 3,233,775 - -1.0 3,233,797 + +2.2 3,233,797 + +1.1 3,233,814 + -3.4 3,233,843 + -0.4 3,233,843 + -1.7 3,233,843 + -1.0 3,233,843 + +2.2 3,233,843 + -0.6 3,233,843 + -0.6 3,233,844 - +0.2 3,233,847 + -1.0 3,233,847 + -0.6 3,233,847 + -0.8 3,233,847 + -0.4 3,233,847 + -1.7 3,233,848 - -0.8 3,233,848 - -0.3 3,233,848 - -0.1 3,233,942 + +0.3 3,233,945 - -1.4 3,233,945 - -3.1 3,233,945 - +0.8 3,233,945 - -0.3 3,233,945 - +0.0 3,233,962 + Psyr_2663 0.14 -0.4 3,234,140 + Psyr_2663 0.63 +0.0 3,234,140 + Psyr_2663 0.63 -0.2 3,234,140 + Psyr_2663 0.63 -1.1 3,234,140 + Psyr_2663 0.63 -1.2 3,234,140 + Psyr_2663 0.63 -0.1 3,234,140 + Psyr_2663 0.63 -2.4 3,234,141 - Psyr_2663 0.64 +1.2 3,234,141 - Psyr_2663 0.64 +0.2 3,234,141 - Psyr_2663 0.64 +0.3 3,234,154 + Psyr_2663 0.67 +1.4 3,234,192 + Psyr_2663 0.78 +0.4 3,234,192 + Psyr_2663 0.78 -1.2 3,234,193 - Psyr_2663 0.78 -0.2 3,234,225 + Psyr_2663 0.87 -0.6 3,234,225 + Psyr_2663 0.87 -0.6 3,234,225 + Psyr_2663 0.87 +1.6 3,234,229 + Psyr_2663 0.88 -1.1 3,234,229 + Psyr_2663 0.88 -1.4 3,234,229 + Psyr_2663 0.88 -0.5 3,234,230 - Psyr_2663 0.88 +0.4 3,234,230 - Psyr_2663 0.88 -1.4 3,234,230 - Psyr_2663 0.88 -1.6 3,234,230 - Psyr_2663 0.88 -1.3 3,234,273 + -0.8 3,234,273 + -1.2 3,234,273 + -1.1 3,234,274 - -0.4 3,234,274 - +1.8 3,234,274 - +1.6 3,234,327 + +0.1 3,234,384 + +0.2 3,234,384 + -1.6 3,234,385 - -0.1 3,234,385 - +0.8 3,234,417 + -0.1 3,234,417 + -0.9 3,234,418 - +0.3 3,234,418 - -2.4 3,234,564 + Psyr_2664 0.21 +0.3 3,234,564 + Psyr_2664 0.21 +0.0 3,234,564 + Psyr_2664 0.21 -0.7 3,234,564 + -1.0 3,234,565 - Psyr_2664 0.21 -2.9 3,234,565 - Psyr_2664 0.21 -0.2 3,234,565 - Psyr_2664 0.21 +0.6 3,234,565 - Psyr_2664 0.21 -2.0 3,234,565 - Psyr_2664 0.21 -0.2 3,234,587 - Psyr_2664 0.24 -0.8 3,234,621 + Psyr_2664 0.28 -0.3 3,234,672 + Psyr_2664 0.36 -2.6 3,234,672 + Psyr_2664 0.36 -0.8 3,234,672 + Psyr_2664 0.36 -1.2 3,234,673 - Psyr_2664 0.36 -0.4 3,234,691 + Psyr_2664 0.38 +0.3 3,234,691 + Psyr_2664 0.38 -0.9 3,234,691 + Psyr_2664 0.38 -0.1 3,234,691 + Psyr_2664 0.38 +0.6 3,234,692 - Psyr_2664 0.38 -1.7 3,234,692 - Psyr_2664 0.38 -0.2 3,234,712 + Psyr_2664 0.41 +0.3 3,234,712 + Psyr_2664 0.41 -1.6 3,234,713 - Psyr_2664 0.41 -1.6 3,234,824 - Psyr_2664 0.57 +0.4 3,234,872 + Psyr_2664 0.63 +0.9 3,234,873 - Psyr_2664 0.63 -0.4 3,234,873 - Psyr_2664 0.63 -1.9 3,234,873 - Psyr_2664 0.63 +0.5 3,234,873 - Psyr_2664 0.63 -1.0 3,234,873 - Psyr_2664 0.63 +0.6 3,234,873 - Psyr_2664 0.63 -0.4 3,234,874 + Psyr_2664 0.64 -1.4 3,234,875 - Psyr_2664 0.64 -3.7 3,234,905 - Psyr_2664 0.68 -1.4 3,234,953 + Psyr_2664 0.75 -0.3 3,234,954 - Psyr_2664 0.75 -0.1 3,235,013 + Psyr_2664 0.83 -1.8 3,235,014 - Psyr_2664 0.83 -0.4 3,235,097 + +0.6 3,235,098 - -0.7 3,235,098 - -2.6 3,235,098 - -0.4 3,235,098 - -2.0 3,235,099 + -0.4 3,235,099 + -0.6 3,235,099 + -2.9 3,235,099 + -3.4 3,235,099 + -1.4 3,235,099 + -2.0 3,235,099 + -0.6 3,235,099 + -2.0 3,235,099 + +1.2 3,235,099 + -2.6 3,235,099 + +0.6 3,235,099 + -3.5 3,235,099 + -1.7 3,235,100 - -0.4 3,235,100 - -1.4 3,235,100 - +0.6 3,235,100 - -3.5 3,235,100 - +0.3 3,235,100 - -3.0 3,235,100 - -1.2 3,235,103 + -1.2 3,235,103 + -1.1 3,235,103 + -1.0 3,235,103 + +0.6 3,235,103 + +0.3 3,235,103 + -2.0 3,235,103 + -0.4 3,235,104 - -3.0 3,235,104 - -2.6 3,235,104 - +0.1 3,235,106 + +0.0 3,235,130 - -1.7 3,235,181 + -3.6 3,235,269 + -0.1 3,235,269 + -1.0 3,235,273 + -1.4 3,235,273 + -4.0 3,235,274 - -2.7 3,235,274 - -1.0 3,235,295 + -2.0 3,235,296 - -2.0 3,235,296 - -2.0 3,235,296 - -0.4 3,235,357 - -1.0 3,235,368 + -1.0 3,235,369 - -1.7 3,235,369 - -1.3 3,235,369 - -1.7 3,235,480 + -0.3 3,235,480 + +0.6 3,235,481 - -1.4 3,235,544 + -0.4 3,235,544 + +0.6 3,235,544 + +0.3 3,235,544 + +0.0 3,235,544 + +0.6 3,235,545 - -0.4 3,235,545 - -0.3 3,235,545 - -1.9 3,235,545 - -0.8 3,235,578 - +0.4 3,235,578 - +0.9 3,235,588 + -1.1 3,235,588 + +0.4 3,235,588 + -0.3 3,235,598 - Psyr_2665 0.11 -1.3 3,235,598 - Psyr_2665 0.11 -0.1 3,235,598 - Psyr_2665 0.11 +0.5 3,235,598 - Psyr_2665 0.11 +0.8 3,235,623 + Psyr_2665 0.16 +1.8 3,235,624 - Psyr_2665 0.16 -1.6 3,235,624 - Psyr_2665 0.16 -0.7 3,235,624 - Psyr_2665 0.16 -0.4 3,235,735 + Psyr_2665 0.38 +0.4 3,235,735 + Psyr_2665 0.38 +0.2 3,235,736 - Psyr_2665 0.38 +0.6 3,235,754 - Psyr_2665 0.42 -0.5 3,235,770 + Psyr_2665 0.45 +2.6 3,235,770 + Psyr_2665 0.45 +1.4 3,235,770 + Psyr_2665 0.45 -0.8 3,235,770 + Psyr_2665 0.45 -0.6 3,235,771 - Psyr_2665 0.45 +0.0 3,235,797 + Psyr_2665 0.50 -1.0 3,235,798 - Psyr_2665 0.51 +1.1 3,235,822 + Psyr_2665 0.55 +0.0 3,235,899 + Psyr_2665 0.71 +0.0 3,235,925 + Psyr_2665 0.76 -0.1 3,235,925 + Psyr_2665 0.76 +0.3 3,235,925 + Psyr_2665 0.76 +0.9 3,235,928 - Psyr_2665 0.76 +0.6 3,235,928 - Psyr_2665 0.76 +0.9 3,235,928 - Psyr_2665 0.76 -1.0 3,235,942 + Psyr_2665 0.79 -0.5 3,236,123 + -1.0 3,236,123 + +2.3
Or see this region's nucleotide sequence