Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2660

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2659 and Psyr_2660 are separated by 153 nucleotidesPsyr_2660 and Psyr_2661 are separated by 89 nucleotides Psyr_2659: Psyr_2659 - Protein of unknown function DUF955, at 3,230,030 to 3,231,307 _2659 Psyr_2660: Psyr_2660 - hypothetical protein, at 3,231,461 to 3,231,742 _2660 Psyr_2661: Psyr_2661 - conserved hypothetical protein, at 3,231,832 to 3,232,917 _2661 Position (kb) 3231 3232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3230.476 kb on + strand, within Psyr_2659at 3230.476 kb on + strand, within Psyr_2659at 3230.476 kb on + strand, within Psyr_2659at 3230.480 kb on + strand, within Psyr_2659at 3230.480 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.501 kb on + strand, within Psyr_2659at 3230.502 kb on - strand, within Psyr_2659at 3230.502 kb on - strand, within Psyr_2659at 3230.502 kb on - strand, within Psyr_2659at 3230.505 kb on + strand, within Psyr_2659at 3230.505 kb on + strand, within Psyr_2659at 3230.505 kb on + strand, within Psyr_2659at 3230.505 kb on + strand, within Psyr_2659at 3230.505 kb on + strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.506 kb on - strand, within Psyr_2659at 3230.509 kb on + strandat 3230.547 kb on - strand, within Psyr_2659at 3230.561 kb on + strand, within Psyr_2659at 3230.561 kb on + strand, within Psyr_2659at 3230.561 kb on + strand, within Psyr_2659at 3230.561 kb on + strand, within Psyr_2659at 3230.561 kb on + strand, within Psyr_2659at 3230.562 kb on - strand, within Psyr_2659at 3230.562 kb on - strand, within Psyr_2659at 3230.564 kb on + strand, within Psyr_2659at 3230.575 kb on + strand, within Psyr_2659at 3230.575 kb on + strand, within Psyr_2659at 3230.575 kb on + strand, within Psyr_2659at 3230.575 kb on + strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.576 kb on - strand, within Psyr_2659at 3230.645 kb on - strand, within Psyr_2659at 3230.645 kb on - strand, within Psyr_2659at 3230.681 kb on + strand, within Psyr_2659at 3230.682 kb on - strand, within Psyr_2659at 3230.683 kb on + strand, within Psyr_2659at 3230.683 kb on + strand, within Psyr_2659at 3230.683 kb on + strandat 3230.683 kb on + strand, within Psyr_2659at 3230.683 kb on + strand, within Psyr_2659at 3230.683 kb on + strandat 3230.683 kb on + strand, within Psyr_2659at 3230.683 kb on + strand, within Psyr_2659at 3230.684 kb on - strand, within Psyr_2659at 3230.684 kb on - strand, within Psyr_2659at 3230.684 kb on - strand, within Psyr_2659at 3230.684 kb on - strand, within Psyr_2659at 3230.684 kb on - strand, within Psyr_2659at 3230.745 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.766 kb on + strand, within Psyr_2659at 3230.767 kb on - strand, within Psyr_2659at 3230.767 kb on - strand, within Psyr_2659at 3230.767 kb on - strand, within Psyr_2659at 3230.767 kb on - strand, within Psyr_2659at 3230.767 kb on - strand, within Psyr_2659at 3230.811 kb on + strand, within Psyr_2659at 3230.973 kb on - strand, within Psyr_2659at 3231.068 kb on - strand, within Psyr_2659at 3231.086 kb on + strand, within Psyr_2659at 3231.087 kb on - strand, within Psyr_2659at 3231.097 kb on + strand, within Psyr_2659at 3231.097 kb on + strand, within Psyr_2659at 3231.097 kb on + strand, within Psyr_2659at 3231.122 kb on + strand, within Psyr_2659at 3231.122 kb on + strand, within Psyr_2659at 3231.165 kb on + strand, within Psyr_2659at 3231.166 kb on - strand, within Psyr_2659at 3231.286 kb on + strandat 3231.287 kb on - strandat 3231.317 kb on - strandat 3231.317 kb on - strandat 3231.328 kb on + strandat 3231.328 kb on + strandat 3231.404 kb on + strandat 3231.404 kb on + strandat 3231.405 kb on - strandat 3231.408 kb on + strandat 3231.408 kb on + strandat 3231.408 kb on + strandat 3231.408 kb on + strandat 3231.408 kb on + strandat 3231.409 kb on - strandat 3231.409 kb on - strandat 3231.409 kb on - strandat 3231.428 kb on + strandat 3231.429 kb on - strandat 3231.463 kb on - strandat 3231.463 kb on - strandat 3231.509 kb on + strand, within Psyr_2660at 3231.510 kb on - strand, within Psyr_2660at 3231.510 kb on - strand, within Psyr_2660at 3231.564 kb on - strand, within Psyr_2660at 3231.564 kb on - strand, within Psyr_2660at 3231.639 kb on + strand, within Psyr_2660at 3231.640 kb on - strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strandat 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.648 kb on + strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.649 kb on - strand, within Psyr_2660at 3231.680 kb on + strand, within Psyr_2660at 3231.681 kb on - strand, within Psyr_2660at 3231.681 kb on - strand, within Psyr_2660at 3231.718 kb on + strandat 3231.719 kb on - strandat 3231.735 kb on - strandat 3231.735 kb on - strandat 3231.833 kb on + strandat 3231.849 kb on + strandat 3231.850 kb on - strandat 3231.877 kb on + strandat 3231.878 kb on - strandat 3231.878 kb on - strandat 3231.911 kb on + strandat 3231.911 kb on + strandat 3231.911 kb on + strandat 3231.911 kb on + strandat 3231.912 kb on - strandat 3231.912 kb on - strandat 3231.912 kb on - strandat 3231.912 kb on - strandat 3231.918 kb on + strandat 3231.942 kb on + strand, within Psyr_2661at 3232.022 kb on - strand, within Psyr_2661at 3232.109 kb on - strand, within Psyr_2661at 3232.192 kb on + strand, within Psyr_2661at 3232.193 kb on - strand, within Psyr_2661at 3232.270 kb on + strand, within Psyr_2661at 3232.270 kb on + strand, within Psyr_2661at 3232.270 kb on + strand, within Psyr_2661at 3232.270 kb on + strand, within Psyr_2661at 3232.271 kb on - strand, within Psyr_2661at 3232.271 kb on - strand, within Psyr_2661at 3232.271 kb on - strand, within Psyr_2661at 3232.271 kb on - strand, within Psyr_2661at 3232.271 kb on - strand, within Psyr_2661at 3232.303 kb on + strand, within Psyr_2661at 3232.303 kb on + strand, within Psyr_2661at 3232.304 kb on - strand, within Psyr_2661at 3232.326 kb on + strand, within Psyr_2661at 3232.326 kb on + strand, within Psyr_2661at 3232.327 kb on - strand, within Psyr_2661at 3232.327 kb on - strand, within Psyr_2661at 3232.327 kb on - strand, within Psyr_2661at 3232.327 kb on - strand, within Psyr_2661at 3232.375 kb on + strand, within Psyr_2661at 3232.376 kb on - strand, within Psyr_2661at 3232.468 kb on + strand, within Psyr_2661at 3232.468 kb on + strand, within Psyr_2661at 3232.469 kb on - strand, within Psyr_2661at 3232.494 kb on + strand, within Psyr_2661at 3232.494 kb on + strand, within Psyr_2661at 3232.494 kb on + strand, within Psyr_2661at 3232.499 kb on - strand, within Psyr_2661at 3232.519 kb on - strand, within Psyr_2661at 3232.564 kb on + strand, within Psyr_2661at 3232.607 kb on - strand, within Psyr_2661at 3232.649 kb on - strand, within Psyr_2661at 3232.649 kb on - strand, within Psyr_2661at 3232.649 kb on - strand, within Psyr_2661at 3232.727 kb on + strand, within Psyr_2661

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,230,476 + Psyr_2659 0.35 +1.9
3,230,476 + Psyr_2659 0.35 -2.7
3,230,476 + Psyr_2659 0.35 -1.7
3,230,480 + Psyr_2659 0.35 -0.4
3,230,480 + Psyr_2659 0.35 -1.0
3,230,501 + Psyr_2659 0.37 +2.6
3,230,501 + Psyr_2659 0.37 -2.0
3,230,501 + Psyr_2659 0.37 -1.0
3,230,501 + Psyr_2659 0.37 -1.5
3,230,501 + Psyr_2659 0.37 +0.1
3,230,501 + Psyr_2659 0.37 -2.0
3,230,502 - Psyr_2659 0.37 -0.5
3,230,502 - Psyr_2659 0.37 -0.9
3,230,502 - Psyr_2659 0.37 +1.2
3,230,505 + Psyr_2659 0.37 -2.4
3,230,505 + Psyr_2659 0.37 -1.1
3,230,505 + Psyr_2659 0.37 -2.0
3,230,505 + Psyr_2659 0.37 -0.8
3,230,505 + Psyr_2659 0.37 -1.0
3,230,506 - Psyr_2659 0.37 +0.4
3,230,506 - Psyr_2659 0.37 -2.7
3,230,506 - Psyr_2659 0.37 -1.0
3,230,506 - Psyr_2659 0.37 -2.4
3,230,506 - Psyr_2659 0.37 -1.0
3,230,506 - Psyr_2659 0.37 -1.2
3,230,509 + +0.6
3,230,547 - Psyr_2659 0.40 -0.1
3,230,561 + Psyr_2659 0.42 -1.7
3,230,561 + Psyr_2659 0.42 -0.4
3,230,561 + Psyr_2659 0.42 -0.5
3,230,561 + Psyr_2659 0.42 -0.4
3,230,561 + Psyr_2659 0.42 -1.7
3,230,562 - Psyr_2659 0.42 +0.9
3,230,562 - Psyr_2659 0.42 +1.2
3,230,564 + Psyr_2659 0.42 -1.7
3,230,575 + Psyr_2659 0.43 -1.3
3,230,575 + Psyr_2659 0.43 -2.6
3,230,575 + Psyr_2659 0.43 -0.1
3,230,575 + Psyr_2659 0.43 -1.4
3,230,576 - Psyr_2659 0.43 +0.6
3,230,576 - Psyr_2659 0.43 -0.1
3,230,576 - Psyr_2659 0.43 +0.6
3,230,576 - Psyr_2659 0.43 +0.2
3,230,576 - Psyr_2659 0.43 +1.6
3,230,576 - Psyr_2659 0.43 -1.2
3,230,576 - Psyr_2659 0.43 -1.3
3,230,576 - Psyr_2659 0.43 -0.7
3,230,645 - Psyr_2659 0.48 +1.2
3,230,645 - Psyr_2659 0.48 +0.3
3,230,681 + Psyr_2659 0.51 -1.9
3,230,682 - Psyr_2659 0.51 -0.3
3,230,683 + Psyr_2659 0.51 -0.4
3,230,683 + Psyr_2659 0.51 -1.4
3,230,683 + +0.6
3,230,683 + Psyr_2659 0.51 +1.0
3,230,683 + Psyr_2659 0.51 -0.4
3,230,683 + -1.4
3,230,683 + Psyr_2659 0.51 -1.7
3,230,683 + Psyr_2659 0.51 +0.6
3,230,684 - Psyr_2659 0.51 +0.0
3,230,684 - Psyr_2659 0.51 -1.5
3,230,684 - Psyr_2659 0.51 -1.7
3,230,684 - Psyr_2659 0.51 -0.8
3,230,684 - Psyr_2659 0.51 -1.0
3,230,745 + Psyr_2659 0.56 -1.4
3,230,766 + Psyr_2659 0.58 -0.2
3,230,766 + Psyr_2659 0.58 +1.0
3,230,766 + Psyr_2659 0.58 -0.5
3,230,766 + Psyr_2659 0.58 +0.8
3,230,766 + Psyr_2659 0.58 -0.3
3,230,766 + Psyr_2659 0.58 -0.4
3,230,766 + Psyr_2659 0.58 -0.4
3,230,766 + Psyr_2659 0.58 -3.2
3,230,767 - Psyr_2659 0.58 -0.1
3,230,767 - Psyr_2659 0.58 +1.2
3,230,767 - Psyr_2659 0.58 -0.1
3,230,767 - Psyr_2659 0.58 +1.2
3,230,767 - Psyr_2659 0.58 +0.2
3,230,811 + Psyr_2659 0.61 -2.0
3,230,973 - Psyr_2659 0.74 +0.1
3,231,068 - Psyr_2659 0.81 -0.1
3,231,086 + Psyr_2659 0.83 -1.3
3,231,087 - Psyr_2659 0.83 +0.0
3,231,097 + Psyr_2659 0.83 -1.5
3,231,097 + Psyr_2659 0.83 +0.3
3,231,097 + Psyr_2659 0.83 -0.9
3,231,122 + Psyr_2659 0.85 -1.9
3,231,122 + Psyr_2659 0.85 -2.1
3,231,165 + Psyr_2659 0.89 -2.1
3,231,166 - Psyr_2659 0.89 +0.6
3,231,286 + -0.1
3,231,287 - +0.6
3,231,317 - -0.7
3,231,317 - -0.9
3,231,328 + -3.2
3,231,328 + -2.9
3,231,404 + +1.1
3,231,404 + +0.0
3,231,405 - -1.2
3,231,408 + +0.6
3,231,408 + -1.7
3,231,408 + -1.2
3,231,408 + -1.1
3,231,408 + -2.1
3,231,409 - -0.3
3,231,409 - +0.0
3,231,409 - +0.8
3,231,428 + -1.4
3,231,429 - -0.7
3,231,463 - -0.6
3,231,463 - +1.1
3,231,509 + Psyr_2660 0.17 -0.8
3,231,510 - Psyr_2660 0.17 +0.3
3,231,510 - Psyr_2660 0.17 +0.5
3,231,564 - Psyr_2660 0.37 +0.6
3,231,564 - Psyr_2660 0.37 +0.2
3,231,639 + Psyr_2660 0.63 -1.6
3,231,640 - Psyr_2660 0.63 +0.3
3,231,648 + Psyr_2660 0.66 -1.9
3,231,648 + Psyr_2660 0.66 +0.6
3,231,648 + Psyr_2660 0.66 -0.2
3,231,648 + Psyr_2660 0.66 +0.6
3,231,648 + +2.2
3,231,648 + Psyr_2660 0.66 +0.2
3,231,648 + Psyr_2660 0.66 +1.3
3,231,648 + Psyr_2660 0.66 +0.4
3,231,648 + Psyr_2660 0.66 -2.1
3,231,648 + Psyr_2660 0.66 +1.3
3,231,648 + Psyr_2660 0.66 +0.4
3,231,648 + Psyr_2660 0.66 +0.4
3,231,648 + Psyr_2660 0.66 -0.4
3,231,648 + Psyr_2660 0.66 +0.5
3,231,648 + Psyr_2660 0.66 -0.6
3,231,648 + Psyr_2660 0.66 +0.3
3,231,648 + Psyr_2660 0.66 -1.0
3,231,649 - Psyr_2660 0.67 -0.5
3,231,649 - Psyr_2660 0.67 +0.1
3,231,649 - Psyr_2660 0.67 +0.0
3,231,649 - Psyr_2660 0.67 +0.0
3,231,649 - Psyr_2660 0.67 -1.2
3,231,649 - Psyr_2660 0.67 -1.1
3,231,649 - Psyr_2660 0.67 -0.4
3,231,649 - Psyr_2660 0.67 +0.1
3,231,649 - Psyr_2660 0.67 -0.4
3,231,649 - Psyr_2660 0.67 -0.2
3,231,649 - Psyr_2660 0.67 +0.5
3,231,649 - Psyr_2660 0.67 +1.3
3,231,680 + Psyr_2660 0.78 +0.3
3,231,681 - Psyr_2660 0.78 +1.2
3,231,681 - Psyr_2660 0.78 -0.3
3,231,718 + +1.0
3,231,719 - +0.4
3,231,735 - +1.4
3,231,735 - -0.7
3,231,833 + +0.6
3,231,849 + -0.3
3,231,850 - +1.1
3,231,877 + +0.6
3,231,878 - -2.0
3,231,878 - -2.2
3,231,911 + +1.6
3,231,911 + -0.2
3,231,911 + -0.1
3,231,911 + -0.6
3,231,912 - -0.3
3,231,912 - +1.0
3,231,912 - +0.1
3,231,912 - -0.2
3,231,918 + -1.5
3,231,942 + Psyr_2661 0.10 -3.0
3,232,022 - Psyr_2661 0.17 -0.6
3,232,109 - Psyr_2661 0.26 +0.2
3,232,192 + Psyr_2661 0.33 +0.9
3,232,193 - Psyr_2661 0.33 +0.0
3,232,270 + Psyr_2661 0.40 +0.6
3,232,270 + Psyr_2661 0.40 +0.0
3,232,270 + Psyr_2661 0.40 -0.4
3,232,270 + Psyr_2661 0.40 +0.9
3,232,271 - Psyr_2661 0.40 -0.6
3,232,271 - Psyr_2661 0.40 -0.4
3,232,271 - Psyr_2661 0.40 -0.7
3,232,271 - Psyr_2661 0.40 +0.9
3,232,271 - Psyr_2661 0.40 +0.0
3,232,303 + Psyr_2661 0.43 -0.0
3,232,303 + Psyr_2661 0.43 +0.4
3,232,304 - Psyr_2661 0.43 -0.5
3,232,326 + Psyr_2661 0.45 -1.4
3,232,326 + Psyr_2661 0.45 -0.3
3,232,327 - Psyr_2661 0.46 +0.2
3,232,327 - Psyr_2661 0.46 -0.5
3,232,327 - Psyr_2661 0.46 -0.1
3,232,327 - Psyr_2661 0.46 +0.3
3,232,375 + Psyr_2661 0.50 -0.2
3,232,376 - Psyr_2661 0.50 +0.1
3,232,468 + Psyr_2661 0.59 -1.3
3,232,468 + Psyr_2661 0.59 -3.0
3,232,469 - Psyr_2661 0.59 -1.4
3,232,494 + Psyr_2661 0.61 -0.7
3,232,494 + Psyr_2661 0.61 +0.3
3,232,494 + Psyr_2661 0.61 -0.1
3,232,499 - Psyr_2661 0.61 +0.0
3,232,519 - Psyr_2661 0.63 -0.1
3,232,564 + Psyr_2661 0.67 +0.1
3,232,607 - Psyr_2661 0.71 -0.8
3,232,649 - Psyr_2661 0.75 -1.1
3,232,649 - Psyr_2661 0.75 -2.3
3,232,649 - Psyr_2661 0.75 -1.1
3,232,727 + Psyr_2661 0.82 +0.1

Or see this region's nucleotide sequence