Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2642

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,208,491	+				-1.7
3,208,491	+				+2.8
3,208,491	+				-1.4
3,208,491	+				+0.6
3,208,492	-				+0.9
3,208,625	+				+0.9
3,208,626	-				-1.2
3,208,626	-				-2.0
3,208,626	-				-3.1
3,208,626	-				-0.1
3,208,626	-				-3.9
3,208,662	-				+0.3
3,208,741	+				+0.6
3,208,742	-				-0.4
3,208,742	-				+0.6
3,208,766	+				-2.2
3,208,767	-				+1.4
3,208,864	-				+1.9
3,208,913	+				+0.0
3,208,913	+				-0.4
3,208,913	+				-3.3
3,208,917	+				-2.2
3,208,918	-				+0.6
3,208,922	+				-0.1
3,208,922	+				-3.3
3,208,923	-				-0.4
3,208,948	+				+1.6
3,208,972	-				-1.1
3,208,984	+				-1.4
3,209,139	+		Psyr_2641	0.29	+0.6
3,209,140	-		Psyr_2641	0.29	+0.3
3,209,140	-		Psyr_2641	0.29	-2.2
3,209,161	+		Psyr_2641	0.34	-1.0
3,209,161	+		Psyr_2641	0.34	-2.0
3,209,162	-		Psyr_2641	0.35	+0.2
3,209,300	+		Psyr_2641	0.68	+1.2
3,209,301	-				+0.6
3,209,304	+		Psyr_2641	0.69	-2.0
3,209,305	-		Psyr_2641	0.70	-0.1
3,209,358	-		Psyr_2641	0.83	-2.3
3,209,611	+		Psyr_2642	0.29	-1.1
3,209,615	-		Psyr_2642	0.29	+0.3
3,209,641	+		Psyr_2642	0.33	-2.4
3,209,641	+		Psyr_2642	0.33	-2.4
3,209,641	+		Psyr_2642	0.33	-3.5
3,209,641	+		Psyr_2642	0.33	-2.4
3,209,642	-		Psyr_2642	0.34	-1.0
3,209,642	-		Psyr_2642	0.34	+0.6
3,209,760	+		Psyr_2642	0.52	-1.4
3,209,760	+		Psyr_2642	0.52	-0.9
3,209,774	+		Psyr_2642	0.54	-2.2
3,209,774	+		Psyr_2642	0.54	-1.2
3,209,774	+		Psyr_2642	0.54	-0.6
3,209,775	-		Psyr_2642	0.54	-1.4
3,209,775	-		Psyr_2642	0.54	-1.4
3,209,775	-		Psyr_2642	0.54	-2.0
3,209,813	+		Psyr_2642	0.60	+1.3
3,209,884	-		Psyr_2642	0.71	-0.1
3,209,929	+		Psyr_2642	0.78	-2.0
3,210,072	+				-2.7
3,210,095	-				-0.4
3,210,115	+				-2.6
3,210,178	-				-1.5
3,210,260	+				-0.6
3,210,342	+				-0.1
3,210,431	+				-0.8
3,210,497	+				-0.4
3,210,542	+				-1.4
3,210,558	+				-0.1
3,210,562	+				-1.4
3,210,563	-				-1.7
3,210,565	-				-3.7
3,210,569	+				+2.6
3,210,570	-				-2.4
3,210,570	-				-3.4
3,210,693	+				-2.3
3,210,703	+				+0.3
3,210,704	-				+0.6
3,210,723	+				-0.7
3,210,810	+				-1.9
3,210,811	-				-0.2
3,210,889	-				+0.1
3,210,953	-				+0.3
3,210,953	-				-1.5
3,211,024	+				+0.4
3,211,025	-				-0.3
3,211,066	+				-2.9
3,211,066	+				-1.2
3,211,067	-				-1.0
3,211,069	+				-0.7