Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2634

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
3,198,853	+		Psyr_2633	0.71	-1.0
3,198,853	+		Psyr_2633	0.71	-0.6
3,198,853	+		Psyr_2633	0.71	-1.2
3,198,853	+		Psyr_2633	0.71	-0.3
3,198,853	+		Psyr_2633	0.71	-1.0
3,198,854	-		Psyr_2633	0.71	-0.1
3,198,885	+		Psyr_2633	0.74	-3.0
3,198,886	-		Psyr_2633	0.74	-0.2
3,198,965	+		Psyr_2633	0.80	+0.7
3,199,050	+		Psyr_2633	0.86	-1.4
3,199,050	+		Psyr_2633	0.86	-0.5
3,199,050	+		Psyr_2633	0.86	-1.0
3,199,050	+		Psyr_2633	0.86	-1.4
3,199,050	+		Psyr_2633	0.86	-1.1
3,199,050	+		Psyr_2633	0.86	-2.0
3,199,050	+		Psyr_2633	0.86	-2.0
3,199,050	+		Psyr_2633	0.86	+0.6
3,199,051	-		Psyr_2633	0.86	+0.2
3,199,051	-		Psyr_2633	0.86	+0.2
3,199,053	-		Psyr_2633	0.86	+1.5
3,199,053	-		Psyr_2633	0.86	+0.3
3,199,168	+				-2.6
3,199,169	-				+0.0
3,199,192	-				-0.2
3,199,242	-				-0.4
3,199,284	+				-0.4
3,199,284	+				-0.1
3,199,284	+				+1.0
3,199,285	-				+1.7
3,199,285	-				-0.8
3,199,333	+				-0.4
3,199,333	+				-1.0
3,199,334	-				+0.6
3,199,334	-				+0.2
3,199,334	-				-0.7
3,199,335	+				-1.7
3,199,335	+				-0.1
3,199,336	-				+1.6
3,199,402	+				+0.6
3,199,408	+				-1.2
3,199,409	-				+0.0
3,199,409	-				-0.3
3,199,513	-				+1.1
3,199,516	+				-1.4
3,199,516	+				+0.0
3,199,567	+				-0.6
3,199,615	-				+0.6
3,199,630	-				-0.7
3,199,630	-				-2.2
3,199,722	-				+0.6
3,199,724	-				+0.3
3,199,724	-				-2.0
3,199,788	-				-1.7
3,199,831	-				-2.3
3,199,831	-				-0.4
3,200,053	+		Psyr_2634	0.14	+0.2
3,200,117	+		Psyr_2634	0.18	-1.2
3,200,118	-		Psyr_2634	0.18	-2.0
3,200,126	+		Psyr_2634	0.19	+1.2
3,200,174	+		Psyr_2634	0.22	-0.4
3,200,174	+		Psyr_2634	0.22	-0.5
3,200,195	+		Psyr_2634	0.23	-1.0
3,200,195	+		Psyr_2634	0.23	+1.8
3,200,195	+		Psyr_2634	0.23	-1.2
3,200,196	-		Psyr_2634	0.23	+0.9
3,200,196	-		Psyr_2634	0.23	+0.9
3,200,196	-		Psyr_2634	0.23	+0.6
3,200,310	+		Psyr_2634	0.30	+0.6
3,200,310	+		Psyr_2634	0.30	+1.2
3,200,310	+		Psyr_2634	0.30	+1.0
3,200,311	-		Psyr_2634	0.30	+0.3
3,200,311	-		Psyr_2634	0.30	-0.8
3,200,311	-		Psyr_2634	0.30	-0.4
3,200,311	-		Psyr_2634	0.30	+0.3
3,200,464	+		Psyr_2634	0.40	+0.8
3,200,503	+		Psyr_2634	0.42	+1.1
3,200,504	-		Psyr_2634	0.42	-2.0
3,200,504	-		Psyr_2634	0.42	-0.3
3,200,504	-		Psyr_2634	0.42	+1.3
3,200,695	+		Psyr_2634	0.54	+0.1
3,200,766	+		Psyr_2634	0.58	-1.5
3,200,785	+		Psyr_2634	0.59	+1.6
3,200,786	-		Psyr_2634	0.59	+0.9
3,200,863	-		Psyr_2634	0.64	+0.2
3,201,459	+				-0.6
3,201,459	+				+0.6
3,201,460	-				+0.5
3,201,460	-				-1.5
3,201,460	-				-0.4
3,201,460	-				+0.6
3,201,460	-				+0.2
3,201,465	+				-0.2
3,201,466	-				-0.7
3,201,505	-				-0.6
3,201,654	+				-1.0
3,201,654	+				+1.5
3,201,655	-				+0.9
3,201,655	-				+2.9
3,201,800	+				+0.9
3,201,925	+		Psyr_2635	0.20	+1.2
3,201,926	-		Psyr_2635	0.20	-2.0
3,202,189	+		Psyr_2635	0.42	+2.9
3,202,190	-		Psyr_2635	0.42	-1.4