Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2630

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2629 and Psyr_2630 overlap by 4 nucleotidesPsyr_2630 and Psyr_2631 are separated by 3 nucleotides Psyr_2629: Psyr_2629 - von Willebrand factor, type A, at 3,189,024 to 3,191,015 _2629 Psyr_2630: Psyr_2630 - conserved hypothetical protein, at 3,191,012 to 3,192,040 _2630 Psyr_2631: Psyr_2631 - HopL1 protein, at 3,192,044 to 3,194,743 _2631 Position (kb) 3191 3192 3193Strain fitness (log2 ratio) -2 -1 0 1 2at 3190.016 kb on - strand, within Psyr_2629at 3190.098 kb on + strand, within Psyr_2629at 3190.099 kb on - strand, within Psyr_2629at 3190.099 kb on - strand, within Psyr_2629at 3190.117 kb on + strand, within Psyr_2629at 3190.117 kb on + strand, within Psyr_2629at 3190.117 kb on + strand, within Psyr_2629at 3190.117 kb on + strand, within Psyr_2629at 3190.118 kb on - strand, within Psyr_2629at 3190.118 kb on - strand, within Psyr_2629at 3190.118 kb on - strand, within Psyr_2629at 3190.118 kb on - strand, within Psyr_2629at 3190.132 kb on + strand, within Psyr_2629at 3190.132 kb on + strand, within Psyr_2629at 3190.132 kb on + strand, within Psyr_2629at 3190.133 kb on - strand, within Psyr_2629at 3190.133 kb on - strand, within Psyr_2629at 3190.226 kb on - strand, within Psyr_2629at 3190.227 kb on + strand, within Psyr_2629at 3190.228 kb on - strand, within Psyr_2629at 3190.261 kb on + strand, within Psyr_2629at 3190.261 kb on + strand, within Psyr_2629at 3190.277 kb on + strand, within Psyr_2629at 3190.415 kb on + strand, within Psyr_2629at 3190.415 kb on + strand, within Psyr_2629at 3190.419 kb on + strand, within Psyr_2629at 3190.499 kb on - strand, within Psyr_2629at 3190.525 kb on + strand, within Psyr_2629at 3190.526 kb on - strand, within Psyr_2629at 3190.526 kb on - strand, within Psyr_2629at 3190.526 kb on - strand, within Psyr_2629at 3190.811 kb on - strand, within Psyr_2629at 3190.816 kb on + strandat 3190.817 kb on - strandat 3190.817 kb on - strandat 3190.826 kb on + strandat 3190.984 kb on - strandat 3190.984 kb on - strandat 3190.984 kb on - strandat 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.139 kb on + strand, within Psyr_2630at 3191.140 kb on - strand, within Psyr_2630at 3191.140 kb on - strand, within Psyr_2630at 3191.143 kb on + strand, within Psyr_2630at 3191.144 kb on - strand, within Psyr_2630at 3191.152 kb on - strand, within Psyr_2630at 3191.164 kb on - strand, within Psyr_2630at 3191.334 kb on - strand, within Psyr_2630at 3191.342 kb on + strand, within Psyr_2630at 3191.495 kb on + strand, within Psyr_2630at 3191.495 kb on + strand, within Psyr_2630at 3191.496 kb on - strand, within Psyr_2630at 3191.671 kb on + strand, within Psyr_2630at 3191.910 kb on + strand, within Psyr_2630at 3191.910 kb on + strand, within Psyr_2630at 3191.913 kb on + strand, within Psyr_2630at 3191.913 kb on + strand, within Psyr_2630at 3191.914 kb on - strand, within Psyr_2630at 3191.975 kb on + strandat 3191.976 kb on - strandat 3191.976 kb on - strandat 3191.976 kb on - strandat 3192.046 kb on - strandat 3192.668 kb on + strand, within Psyr_2631at 3192.668 kb on + strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.669 kb on - strand, within Psyr_2631at 3192.754 kb on - strand, within Psyr_2631at 3192.754 kb on - strand, within Psyr_2631at 3192.789 kb on + strand, within Psyr_2631at 3192.809 kb on + strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.810 kb on - strand, within Psyr_2631at 3192.904 kb on - strand, within Psyr_2631at 3192.906 kb on + strand, within Psyr_2631at 3192.926 kb on + strand, within Psyr_2631at 3192.961 kb on + strand, within Psyr_2631at 3192.961 kb on + strand, within Psyr_2631

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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3,190,016 - Psyr_2629 0.50 -0.1
3,190,098 + Psyr_2629 0.54 -0.8
3,190,099 - Psyr_2629 0.54 +0.6
3,190,099 - Psyr_2629 0.54 -0.3
3,190,117 + Psyr_2629 0.55 -1.4
3,190,117 + Psyr_2629 0.55 -0.8
3,190,117 + Psyr_2629 0.55 +2.2
3,190,117 + Psyr_2629 0.55 -1.0
3,190,118 - Psyr_2629 0.55 +0.8
3,190,118 - Psyr_2629 0.55 -1.0
3,190,118 - Psyr_2629 0.55 +0.8
3,190,118 - Psyr_2629 0.55 -0.2
3,190,132 + Psyr_2629 0.56 +1.6
3,190,132 + Psyr_2629 0.56 -1.9
3,190,132 + Psyr_2629 0.56 +0.0
3,190,133 - Psyr_2629 0.56 +0.9
3,190,133 - Psyr_2629 0.56 -0.4
3,190,226 - Psyr_2629 0.60 -0.7
3,190,227 + Psyr_2629 0.60 -1.0
3,190,228 - Psyr_2629 0.60 -1.2
3,190,261 + Psyr_2629 0.62 +1.3
3,190,261 + Psyr_2629 0.62 +0.1
3,190,277 + Psyr_2629 0.63 +0.5
3,190,415 + Psyr_2629 0.70 -1.5
3,190,415 + Psyr_2629 0.70 +0.9
3,190,419 + Psyr_2629 0.70 -0.4
3,190,499 - Psyr_2629 0.74 +0.6
3,190,525 + Psyr_2629 0.75 -0.3
3,190,526 - Psyr_2629 0.75 -1.4
3,190,526 - Psyr_2629 0.75 +0.0
3,190,526 - Psyr_2629 0.75 -1.0
3,190,811 - Psyr_2629 0.90 +1.4
3,190,816 + +0.6
3,190,817 - -0.2
3,190,817 - -0.7
3,190,826 + -0.3
3,190,984 - +0.1
3,190,984 - -1.4
3,190,984 - -1.2
3,191,139 + Psyr_2630 0.12 +0.3
3,191,139 + Psyr_2630 0.12 -1.2
3,191,139 + Psyr_2630 0.12 -0.5
3,191,139 + Psyr_2630 0.12 -1.9
3,191,139 + Psyr_2630 0.12 -0.1
3,191,140 - Psyr_2630 0.12 -0.2
3,191,140 - Psyr_2630 0.12 -0.6
3,191,143 + Psyr_2630 0.13 -0.1
3,191,144 - Psyr_2630 0.13 -0.1
3,191,152 - Psyr_2630 0.14 +0.0
3,191,164 - Psyr_2630 0.15 -0.2
3,191,334 - Psyr_2630 0.31 -1.2
3,191,342 + Psyr_2630 0.32 +0.2
3,191,495 + Psyr_2630 0.47 -0.9
3,191,495 + Psyr_2630 0.47 -0.4
3,191,496 - Psyr_2630 0.47 -0.5
3,191,671 + Psyr_2630 0.64 -1.7
3,191,910 + Psyr_2630 0.87 -0.5
3,191,910 + Psyr_2630 0.87 +0.6
3,191,913 + Psyr_2630 0.88 +1.6
3,191,913 + Psyr_2630 0.88 -0.5
3,191,914 - Psyr_2630 0.88 +0.6
3,191,975 + -1.1
3,191,976 - +0.8
3,191,976 - -1.3
3,191,976 - +2.6
3,192,046 - -0.5
3,192,668 + Psyr_2631 0.23 -1.7
3,192,668 + Psyr_2631 0.23 -1.2
3,192,669 - Psyr_2631 0.23 +0.5
3,192,669 - Psyr_2631 0.23 +0.0
3,192,669 - Psyr_2631 0.23 +0.0
3,192,754 - Psyr_2631 0.26 +0.9
3,192,754 - Psyr_2631 0.26 -0.5
3,192,789 + Psyr_2631 0.28 -0.2
3,192,809 + Psyr_2631 0.28 +0.3
3,192,810 - Psyr_2631 0.28 +0.3
3,192,810 - Psyr_2631 0.28 +0.0
3,192,810 - Psyr_2631 0.28 -0.6
3,192,904 - Psyr_2631 0.32 +1.2
3,192,906 + Psyr_2631 0.32 +0.3
3,192,926 + Psyr_2631 0.33 +0.8
3,192,961 + Psyr_2631 0.34 -0.7
3,192,961 + Psyr_2631 0.34 +0.7

Or see this region's nucleotide sequence