Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2489

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2487 and Psyr_2488 are separated by 44 nucleotidesPsyr_2488 and Psyr_2489 are separated by 337 nucleotidesPsyr_2489 and Psyr_2490 are separated by 19 nucleotides Psyr_2487: Psyr_2487 - Short-chain dehydrogenase/reductase SDR, at 2,890,843 to 2,891,589 _2487 Psyr_2488: Psyr_2488 - hypothetical protein, at 2,891,634 to 2,891,966 _2488 Psyr_2489: Psyr_2489 - Alpha amylase, catalytic region, at 2,892,304 to 2,894,322 _2489 Psyr_2490: Psyr_2490 - trehalose synthase, at 2,894,342 to 2,897,668 _2490 Position (kb) 2892 2893 2894 2895Strain fitness (log2 ratio) -2 -1 0 1 2at 2891.396 kb on + strand, within Psyr_2487at 2891.396 kb on + strand, within Psyr_2487at 2891.548 kb on + strandat 2891.549 kb on - strandat 2891.549 kb on - strandat 2891.898 kb on + strand, within Psyr_2488at 2891.898 kb on + strand, within Psyr_2488at 2891.898 kb on + strand, within Psyr_2488at 2891.898 kb on + strand, within Psyr_2488at 2891.898 kb on + strand, within Psyr_2488at 2891.899 kb on - strand, within Psyr_2488at 2891.899 kb on - strand, within Psyr_2488at 2891.899 kb on - strand, within Psyr_2488at 2891.900 kb on + strand, within Psyr_2488at 2891.900 kb on + strand, within Psyr_2488at 2891.901 kb on - strand, within Psyr_2488at 2891.938 kb on - strandat 2892.007 kb on + strandat 2892.007 kb on + strandat 2892.100 kb on + strandat 2892.100 kb on + strandat 2892.187 kb on + strandat 2892.228 kb on + strandat 2892.229 kb on - strandat 2892.238 kb on + strandat 2892.319 kb on + strandat 2892.319 kb on + strandat 2892.493 kb on + strandat 2892.673 kb on + strand, within Psyr_2489at 2892.674 kb on - strand, within Psyr_2489at 2892.674 kb on - strand, within Psyr_2489at 2892.967 kb on + strand, within Psyr_2489at 2893.076 kb on - strand, within Psyr_2489at 2893.394 kb on - strand, within Psyr_2489at 2893.657 kb on + strand, within Psyr_2489at 2893.657 kb on + strand, within Psyr_2489at 2893.657 kb on + strand, within Psyr_2489at 2893.658 kb on - strand, within Psyr_2489at 2893.658 kb on - strand, within Psyr_2489at 2893.658 kb on - strand, within Psyr_2489at 2893.663 kb on + strand, within Psyr_2489at 2893.663 kb on + strand, within Psyr_2489at 2893.663 kb on + strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.664 kb on - strand, within Psyr_2489at 2893.702 kb on + strand, within Psyr_2489at 2893.860 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.864 kb on + strand, within Psyr_2489at 2893.865 kb on - strand, within Psyr_2489at 2893.865 kb on - strand, within Psyr_2489at 2893.865 kb on - strand, within Psyr_2489at 2893.865 kb on - strand, within Psyr_2489at 2894.050 kb on + strand, within Psyr_2489at 2894.077 kb on + strand, within Psyr_2489at 2894.077 kb on + strand, within Psyr_2489at 2894.206 kb on - strandat 2894.248 kb on + strandat 2894.257 kb on + strandat 2894.257 kb on + strandat 2894.257 kb on + strandat 2894.257 kb on + strandat 2894.257 kb on + strandat 2894.257 kb on + strandat 2894.258 kb on - strandat 2894.321 kb on - strandat 2894.371 kb on + strandat 2894.371 kb on + strandat 2894.390 kb on + strandat 2894.390 kb on + strandat 2894.391 kb on - strandat 2894.489 kb on + strandat 2894.490 kb on - strandat 2894.561 kb on + strandat 2894.562 kb on - strandat 2894.683 kb on + strand, within Psyr_2490at 2894.683 kb on + strand, within Psyr_2490at 2894.683 kb on + strand, within Psyr_2490at 2894.684 kb on - strand, within Psyr_2490at 2894.684 kb on - strand, within Psyr_2490at 2894.684 kb on - strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.753 kb on + strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.754 kb on - strand, within Psyr_2490at 2894.780 kb on + strand, within Psyr_2490at 2894.853 kb on - strand, within Psyr_2490at 2894.988 kb on - strand, within Psyr_2490at 2895.134 kb on + strand, within Psyr_2490at 2895.134 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.209 kb on + strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490at 2895.210 kb on - strand, within Psyr_2490

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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2,891,396 + Psyr_2487 0.74 +0.4
2,891,396 + Psyr_2487 0.74 +0.6
2,891,548 + -0.6
2,891,549 - +1.2
2,891,549 - +1.0
2,891,898 + Psyr_2488 0.79 +0.0
2,891,898 + Psyr_2488 0.79 +1.3
2,891,898 + Psyr_2488 0.79 -2.7
2,891,898 + Psyr_2488 0.79 -1.7
2,891,898 + Psyr_2488 0.79 -1.7
2,891,899 - Psyr_2488 0.80 +0.3
2,891,899 - Psyr_2488 0.80 -0.0
2,891,899 - Psyr_2488 0.80 +1.8
2,891,900 + Psyr_2488 0.80 -1.7
2,891,900 + Psyr_2488 0.80 +0.6
2,891,901 - Psyr_2488 0.80 -0.0
2,891,938 - -1.7
2,892,007 + -0.8
2,892,007 + -0.7
2,892,100 + -1.1
2,892,100 + -1.0
2,892,187 + -1.0
2,892,228 + +0.7
2,892,229 - -0.0
2,892,238 + +0.8
2,892,319 + -2.2
2,892,319 + +0.4
2,892,493 + -0.1
2,892,673 + Psyr_2489 0.18 -0.9
2,892,674 - Psyr_2489 0.18 +1.2
2,892,674 - Psyr_2489 0.18 +1.1
2,892,967 + Psyr_2489 0.33 -0.9
2,893,076 - Psyr_2489 0.38 +1.6
2,893,394 - Psyr_2489 0.54 +0.6
2,893,657 + Psyr_2489 0.67 -0.4
2,893,657 + Psyr_2489 0.67 -0.4
2,893,657 + Psyr_2489 0.67 +2.6
2,893,658 - Psyr_2489 0.67 -0.6
2,893,658 - Psyr_2489 0.67 -1.4
2,893,658 - Psyr_2489 0.67 +0.2
2,893,663 + Psyr_2489 0.67 +0.6
2,893,663 + Psyr_2489 0.67 +0.4
2,893,663 + Psyr_2489 0.67 -0.1
2,893,664 - Psyr_2489 0.67 -0.9
2,893,664 - Psyr_2489 0.67 +0.2
2,893,664 - Psyr_2489 0.67 -1.5
2,893,664 - Psyr_2489 0.67 +0.1
2,893,664 - Psyr_2489 0.67 +0.3
2,893,664 - Psyr_2489 0.67 +0.1
2,893,702 + Psyr_2489 0.69 -0.1
2,893,860 + Psyr_2489 0.77 -1.3
2,893,864 + Psyr_2489 0.77 -0.7
2,893,864 + Psyr_2489 0.77 -0.1
2,893,864 + Psyr_2489 0.77 -0.1
2,893,864 + Psyr_2489 0.77 -0.9
2,893,864 + Psyr_2489 0.77 +1.1
2,893,864 + Psyr_2489 0.77 -0.4
2,893,865 - Psyr_2489 0.77 -0.2
2,893,865 - Psyr_2489 0.77 +0.2
2,893,865 - Psyr_2489 0.77 +0.1
2,893,865 - Psyr_2489 0.77 +0.3
2,894,050 + Psyr_2489 0.86 +1.3
2,894,077 + Psyr_2489 0.88 -0.4
2,894,077 + Psyr_2489 0.88 -0.4
2,894,206 - +0.3
2,894,248 + -1.5
2,894,257 + +1.5
2,894,257 + -0.2
2,894,257 + +2.6
2,894,257 + -1.0
2,894,257 + -1.4
2,894,257 + +0.3
2,894,258 - +0.8
2,894,321 - +0.8
2,894,371 + +0.8
2,894,371 + +0.1
2,894,390 + -0.4
2,894,390 + +0.1
2,894,391 - +0.0
2,894,489 + +0.8
2,894,490 - -0.5
2,894,561 + +0.7
2,894,562 - -0.4
2,894,683 + Psyr_2490 0.10 -0.0
2,894,683 + Psyr_2490 0.10 -0.4
2,894,683 + Psyr_2490 0.10 -0.3
2,894,684 - Psyr_2490 0.10 -0.2
2,894,684 - Psyr_2490 0.10 -2.1
2,894,684 - Psyr_2490 0.10 -0.5
2,894,753 + Psyr_2490 0.12 -1.1
2,894,753 + Psyr_2490 0.12 +0.9
2,894,753 + Psyr_2490 0.12 +0.3
2,894,753 + Psyr_2490 0.12 -0.2
2,894,753 + Psyr_2490 0.12 -0.2
2,894,753 + Psyr_2490 0.12 +0.1
2,894,753 + Psyr_2490 0.12 -0.4
2,894,753 + Psyr_2490 0.12 -1.0
2,894,753 + Psyr_2490 0.12 -0.2
2,894,753 + Psyr_2490 0.12 +0.1
2,894,753 + Psyr_2490 0.12 +0.4
2,894,753 + Psyr_2490 0.12 -0.2
2,894,754 - Psyr_2490 0.12 +1.0
2,894,754 - Psyr_2490 0.12 -1.2
2,894,754 - Psyr_2490 0.12 +0.8
2,894,754 - Psyr_2490 0.12 -0.0
2,894,754 - Psyr_2490 0.12 -0.7
2,894,754 - Psyr_2490 0.12 +0.9
2,894,754 - Psyr_2490 0.12 -0.3
2,894,754 - Psyr_2490 0.12 -0.4
2,894,754 - Psyr_2490 0.12 -0.3
2,894,780 + Psyr_2490 0.13 -0.3
2,894,853 - Psyr_2490 0.15 -0.4
2,894,988 - Psyr_2490 0.19 -0.4
2,895,134 + Psyr_2490 0.24 -0.0
2,895,134 + Psyr_2490 0.24 +1.6
2,895,209 + Psyr_2490 0.26 +0.7
2,895,209 + Psyr_2490 0.26 -0.0
2,895,209 + Psyr_2490 0.26 -0.1
2,895,209 + Psyr_2490 0.26 +1.4
2,895,209 + Psyr_2490 0.26 +0.2
2,895,209 + Psyr_2490 0.26 -0.6
2,895,210 - Psyr_2490 0.26 +0.3
2,895,210 - Psyr_2490 0.26 +0.1
2,895,210 - Psyr_2490 0.26 -0.4
2,895,210 - Psyr_2490 0.26 +0.6
2,895,210 - Psyr_2490 0.26 +1.1
2,895,210 - Psyr_2490 0.26 +0.3
2,895,210 - Psyr_2490 0.26 -0.0

Or see this region's nucleotide sequence