Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2462

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,848,721	+		Psyr_2460	0.79	-0.2
2,848,721	+		Psyr_2460	0.79	-1.0
2,848,721	+		Psyr_2460	0.79	-0.4
2,848,722	-		Psyr_2460	0.79	-0.7
2,848,722	-		Psyr_2460	0.79	+1.2
2,848,828	+		Psyr_2460	0.89	+0.2
2,848,828	+		Psyr_2460	0.89	+1.6
2,848,829	-		Psyr_2460	0.89	+0.2
2,848,939	+				-0.8
2,848,939	+				-0.8
2,848,939	+				+0.7
2,848,939	+				+0.4
2,848,939	+				+1.0
2,848,939	+				+1.6
2,848,940	-				-0.0
2,848,940	-				+3.2
2,848,945	+				+0.9
2,848,945	+				-0.5
2,848,945	+				+0.1
2,848,945	+				+0.8
2,848,945	+				-1.3
2,848,946	-				+0.2
2,848,946	-				+0.2
2,849,149	+				-1.1
2,849,188	+		Psyr_2461	0.17	+0.2
2,849,242	+		Psyr_2461	0.28	-1.4
2,849,242	+		Psyr_2461	0.28	-2.9
2,849,243	-		Psyr_2461	0.28	+0.8
2,849,243	-		Psyr_2461	0.28	-0.9
2,849,294	-		Psyr_2461	0.39	+0.1
2,849,597	+				-0.7
2,849,628	+				+1.4
2,849,629	-				+0.9
2,849,636	+				-3.6
2,849,637	-				-0.4
2,849,637	-				-0.6
2,849,679	-				+0.3
2,849,792	+		Psyr_2462	0.13	-1.2
2,849,877	+		Psyr_2462	0.18	-1.0
2,849,878	-		Psyr_2462	0.18	-1.8
2,849,880	+		Psyr_2462	0.18	-0.8
2,850,240	-		Psyr_2462	0.40	+0.6
2,850,347	+		Psyr_2462	0.46	-0.4
2,850,347	+		Psyr_2462	0.46	+1.4
2,850,348	-		Psyr_2462	0.46	-0.8
2,850,500	+		Psyr_2462	0.55	-0.8
2,850,500	+		Psyr_2462	0.55	-2.0
2,850,501	-		Psyr_2462	0.55	-1.3
2,850,501	-		Psyr_2462	0.55	-0.4
2,850,501	-		Psyr_2462	0.55	-0.7
2,850,501	-				-1.0
2,850,531	-		Psyr_2462	0.57	-2.8
2,850,758	+		Psyr_2462	0.71	-0.2
2,850,895	-		Psyr_2462	0.79	-0.8
2,850,967	+		Psyr_2462	0.84	-2.8
2,850,968	-		Psyr_2462	0.84	-2.0
2,851,003	-		Psyr_2462	0.86	-1.2
2,851,103	+				-1.7
2,851,103	+				+0.2
2,851,103	+				-0.0
2,851,103	+				-2.2
2,851,103	+				-2.8
2,851,103	+				+0.0
2,851,164	-				+2.2
2,851,231	+				+0.2
2,851,231	+				-1.2
2,851,232	-				+1.6
2,851,232	-				+0.2
2,851,235	+				-0.3
2,851,235	+				+0.8
2,851,235	+				-0.8
2,851,235	+				+0.2
2,851,235	+				+0.1
2,851,235	+				+1.6
2,851,235	+				-0.0
2,851,235	+				-1.0
2,851,235	+				-2.0
2,851,235	+				+0.6
2,851,235	+				-0.4
2,851,235	+				-0.2
2,851,235	+				-1.0
2,851,235	+				-0.7
2,851,235	+				-1.2
2,851,235	+				-0.4
2,851,236	-				+2.9
2,851,236	-				-3.0
2,851,236	-				+0.2
2,851,236	-				-0.2
2,851,236	-				+0.2
2,851,236	-				-1.3
2,851,236	-				-0.2
2,851,236	-				-0.2
2,851,236	-				-0.4
2,851,236	-				-0.0
2,851,236	-				-0.4
2,851,236	-				-2.4
2,851,236	-				+0.6
2,851,239	+				-0.4
2,851,239	+				-1.8
2,851,239	+				-1.4
2,851,239	+				-0.6
2,851,239	+				-1.4
2,851,239	+				+1.0
2,851,239	+				+0.6
2,851,239	+				-1.6
2,851,239	+				+2.4
2,851,239	+				+0.3
2,851,240	-				-0.7
2,851,240	-				-0.4
2,851,240	-				+0.3
2,851,240	-				+0.1
2,851,240	-				-0.4
2,851,240	-				-1.8
2,851,240	-				-0.0
2,851,240	-				+0.1
2,851,240	-				-0.4
2,851,240	-				-0.3
2,851,240	-				+0.8
2,851,240	-				+0.8
2,851,240	-				-2.0
2,851,240	-				-1.0
2,851,241	+				+0.6
2,851,241	+				+0.1
2,851,241	+				-0.2
2,851,241	+				-0.9
2,851,241	+				-1.4
2,851,241	+				+0.6
2,851,241	+				-1.2
2,851,241	+				-0.8
2,851,241	+				-1.0
2,851,241	+				-0.4
2,851,241	+				-0.3
2,851,241	+				+1.3
2,851,241	+				+1.3
2,851,241	+				-1.4
2,851,242	-				-0.6
2,851,242	-				-1.8
2,851,242	-				+0.7
2,851,242	-				-1.0
2,851,242	-				-2.0
2,851,242	-				+1.0
2,851,242	-				+0.6
2,851,242	-				-0.2
2,851,242	-				-2.0
2,851,242	-				-0.5
2,851,461	+				-0.0
2,851,495	-				-0.2
2,851,495	-				-1.1
2,851,495	-				+0.4
2,851,638	+				+2.9
2,851,638	+				+0.3
2,851,639	-				+0.6
2,851,660	-				+1.4
2,851,794	-				+1.0
2,851,806	+				+0.6
2,851,807	-				-0.4
2,851,807	-				+0.6
2,851,807	-				-2.0
2,851,807	-				+0.6
2,851,807	-				-0.8
2,851,807	-				-0.9
2,851,807	-				+0.3
2,851,807	-				+0.6
2,851,807	-				-0.2
2,851,822	+				+0.4
2,851,823	-				-0.3
2,851,823	-				+0.1
2,851,966	+		Psyr_2463	0.16	+0.2
2,851,966	+		Psyr_2463	0.16	-0.7
2,851,966	+		Psyr_2463	0.16	-1.8
2,851,967	-		Psyr_2463	0.16	-1.8
2,851,971	+		Psyr_2463	0.16	-0.2
2,851,971	+		Psyr_2463	0.16	-0.8
2,851,971	+		Psyr_2463	0.16	-0.3
2,851,972	-		Psyr_2463	0.16	+0.1
2,851,972	-		Psyr_2463	0.16	+1.0
2,851,972	-		Psyr_2463	0.16	+1.2
2,851,972	-		Psyr_2463	0.16	-0.2
2,852,044	-		Psyr_2463	0.23	-0.3
2,852,044	-		Psyr_2463	0.23	+1.6
2,852,090	+		Psyr_2463	0.27	+1.2
2,852,090	+		Psyr_2463	0.27	+0.8
2,852,090	+		Psyr_2463	0.27	-1.2
2,852,090	+		Psyr_2463	0.27	+2.2
2,852,091	-		Psyr_2463	0.27	-0.4
2,852,091	-		Psyr_2463	0.27	+0.4
2,852,091	-		Psyr_2463	0.27	-0.3
2,852,091	-		Psyr_2463	0.27	-0.1
2,852,091	-		Psyr_2463	0.27	+0.2
2,852,091	-		Psyr_2463	0.27	-0.7
2,852,091	-		Psyr_2463	0.27	+0.2