Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2395

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2394 and Psyr_2395 are separated by 101 nucleotidesPsyr_2395 and Psyr_2396 overlap by 4 nucleotides Psyr_2394: Psyr_2394 - succinate semialdehyde dehydrogenase, at 2,775,689 to 2,777,080 _2394 Psyr_2395: Psyr_2395 - transcriptional regulator, LysR family, at 2,777,182 to 2,778,057 _2395 Psyr_2396: Psyr_2396 - Tartrate dehydrogenase, at 2,778,054 to 2,779,175 _2396 Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2776.570 kb on - strand, within Psyr_2394at 2776.570 kb on - strand, within Psyr_2394at 2776.583 kb on + strand, within Psyr_2394at 2776.584 kb on - strand, within Psyr_2394at 2776.584 kb on - strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.608 kb on + strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2776.609 kb on - strand, within Psyr_2394at 2777.011 kb on - strandat 2777.074 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.116 kb on + strandat 2777.117 kb on - strandat 2777.118 kb on + strandat 2777.119 kb on - strandat 2777.119 kb on - strandat 2777.380 kb on + strand, within Psyr_2395at 2777.380 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.733 kb on + strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.734 kb on - strand, within Psyr_2395at 2777.928 kb on + strand, within Psyr_2395at 2778.056 kb on - strandat 2778.728 kb on - strand, within Psyr_2396at 2778.994 kb on + strand, within Psyr_2396at 2778.998 kb on - strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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2,776,570 - Psyr_2394 0.63 -0.8
2,776,570 - Psyr_2394 0.63 -0.9
2,776,583 + Psyr_2394 0.64 -1.2
2,776,584 - Psyr_2394 0.64 +1.1
2,776,584 - Psyr_2394 0.64 +0.4
2,776,608 + Psyr_2394 0.66 +2.6
2,776,608 + Psyr_2394 0.66 +0.3
2,776,608 + Psyr_2394 0.66 -1.0
2,776,608 + Psyr_2394 0.66 -1.6
2,776,608 + Psyr_2394 0.66 +0.6
2,776,608 + Psyr_2394 0.66 -0.3
2,776,608 + Psyr_2394 0.66 -0.3
2,776,608 + Psyr_2394 0.66 -1.0
2,776,608 + Psyr_2394 0.66 +1.6
2,776,608 + Psyr_2394 0.66 -1.2
2,776,608 + Psyr_2394 0.66 +0.2
2,776,608 + Psyr_2394 0.66 -2.2
2,776,608 + Psyr_2394 0.66 +0.6
2,776,609 - Psyr_2394 0.66 +0.1
2,776,609 - Psyr_2394 0.66 -1.3
2,776,609 - Psyr_2394 0.66 -0.1
2,776,609 - Psyr_2394 0.66 +0.1
2,776,609 - Psyr_2394 0.66 -0.4
2,776,609 - Psyr_2394 0.66 +1.2
2,776,609 - Psyr_2394 0.66 -0.4
2,776,609 - Psyr_2394 0.66 -1.0
2,777,011 - -0.2
2,777,074 + +0.2
2,777,116 + +0.4
2,777,116 + +0.2
2,777,116 + +0.8
2,777,116 + -0.3
2,777,116 + -1.1
2,777,116 + +0.0
2,777,116 + +0.1
2,777,117 - -0.3
2,777,118 + +3.9
2,777,119 - -0.8
2,777,119 - +0.8
2,777,380 + Psyr_2395 0.23 -1.2
2,777,380 + Psyr_2395 0.23 +0.0
2,777,733 + Psyr_2395 0.63 -1.0
2,777,733 + Psyr_2395 0.63 -1.1
2,777,733 + Psyr_2395 0.63 -0.8
2,777,733 + Psyr_2395 0.63 +0.1
2,777,733 + Psyr_2395 0.63 -0.0
2,777,733 + Psyr_2395 0.63 +0.4
2,777,733 + Psyr_2395 0.63 -1.0
2,777,733 + Psyr_2395 0.63 -1.3
2,777,733 + Psyr_2395 0.63 +1.0
2,777,734 - Psyr_2395 0.63 +0.4
2,777,734 - Psyr_2395 0.63 -0.2
2,777,734 - Psyr_2395 0.63 -0.6
2,777,734 - Psyr_2395 0.63 -1.8
2,777,734 - Psyr_2395 0.63 -3.5
2,777,928 + Psyr_2395 0.85 +0.6
2,778,056 - +1.9
2,778,728 - Psyr_2396 0.60 -0.3
2,778,994 + Psyr_2396 0.84 +0.3
2,778,998 - Psyr_2396 0.84 -1.8
2,779,021 + Psyr_2396 0.86 +0.7
2,779,021 + Psyr_2396 0.86 +0.4

Or see this region's nucleotide sequence