Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2377

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,754,862	+				+0.6
2,754,987	-				+0.3
2,754,994	+				+0.6
2,754,995	-				+0.1
2,755,100	-		Psyr_2376	0.12	+0.6
2,755,101	+		Psyr_2376	0.12	+2.2
2,755,101	+		Psyr_2376	0.12	+0.8
2,755,133	-		Psyr_2376	0.17	+0.6
2,755,164	+		Psyr_2376	0.21	-1.3
2,755,164	+		Psyr_2376	0.21	-0.0
2,755,165	-		Psyr_2376	0.21	-0.2
2,755,191	+		Psyr_2376	0.24	+0.1
2,755,236	+		Psyr_2376	0.30	+0.8
2,755,236	+		Psyr_2376	0.30	+0.9
2,755,236	+		Psyr_2376	0.30	-1.8
2,755,236	+		Psyr_2376	0.30	+0.8
2,755,236	+		Psyr_2376	0.30	-0.4
2,755,237	-		Psyr_2376	0.30	+0.2
2,755,239	+		Psyr_2376	0.30	+0.6
2,755,239	+		Psyr_2376	0.30	+0.7
2,755,249	+		Psyr_2376	0.31	-0.2
2,755,306	+		Psyr_2376	0.39	+0.6
2,755,306	+		Psyr_2376	0.39	+0.6
2,755,339	-		Psyr_2376	0.43	-0.1
2,755,339	-		Psyr_2376	0.43	-0.8
2,755,511	-		Psyr_2376	0.65	-0.3
2,755,596	+		Psyr_2376	0.76	-2.0
2,755,614	+		Psyr_2376	0.78	-0.6
2,755,614	+		Psyr_2376	0.78	+0.4
2,755,615	-		Psyr_2376	0.78	-1.0
2,755,746	-				+1.0
2,755,901	-				+0.2
2,755,917	+				+0.3
2,755,949	-				-1.4
2,756,038	+		Psyr_2377	0.13	-0.9
2,756,049	-		Psyr_2377	0.14	-2.1
2,756,111	+		Psyr_2377	0.18	-0.6
2,756,111	+		Psyr_2377	0.18	-0.4
2,756,112	-		Psyr_2377	0.18	+0.9
2,756,112	-		Psyr_2377	0.18	-1.6
2,756,112	-		Psyr_2377	0.18	-0.0
2,756,307	+		Psyr_2377	0.29	+0.6
2,756,307	+		Psyr_2377	0.29	-1.1
2,756,307	+		Psyr_2377	0.29	-1.0
2,756,308	-		Psyr_2377	0.29	+0.6
2,756,308	-		Psyr_2377	0.29	-0.6
2,756,308	-		Psyr_2377	0.29	-1.2
2,756,308	-		Psyr_2377	0.29	-0.9
2,756,364	-		Psyr_2377	0.33	-0.1
2,756,425	+		Psyr_2377	0.37	-2.2
2,756,425	+		Psyr_2377	0.37	-0.0
2,756,425	+		Psyr_2377	0.37	-0.2
2,756,426	-		Psyr_2377	0.37	+3.4
2,756,426	-		Psyr_2377	0.37	-0.6
2,756,660	+		Psyr_2377	0.51	+0.7
2,756,684	+		Psyr_2377	0.52	-1.4
2,756,802	+		Psyr_2377	0.59	-0.1
2,756,802	+		Psyr_2377	0.59	-0.4
2,756,802	+		Psyr_2377	0.59	-0.8
2,756,803	-		Psyr_2377	0.59	+0.9
2,756,803	-		Psyr_2377	0.59	-2.9
2,756,803	-		Psyr_2377	0.59	+0.3
2,756,803	-		Psyr_2377	0.59	-0.2
2,757,273	+		Psyr_2377	0.88	-1.5
2,757,273	+		Psyr_2377	0.88	-0.0
2,757,274	-		Psyr_2377	0.88	+2.3
2,757,274	-		Psyr_2377	0.88	-0.1
2,757,431	+				+0.6
2,757,432	-				+0.6
2,757,432	-				+0.7
2,757,479	+				-0.2
2,757,480	-				-0.7
2,757,480	-				+1.1
2,757,480	-				+1.6
2,757,664	+				+0.3
2,757,665	-				+0.9
2,757,665	-				+0.9
2,757,665	-				+1.1
2,757,666	+				-0.2
2,757,666	+				+2.6
2,757,737	+				-0.6
2,757,928	+		Psyr_2378	0.32	-0.4
2,758,219	+		Psyr_2378	0.69	-0.1
2,758,219	+		Psyr_2378	0.69	+1.2
2,758,220	-		Psyr_2378	0.69	-0.1
2,758,220	-		Psyr_2378	0.69	-1.8
2,758,220	-		Psyr_2378	0.69	-0.1
2,758,220	-		Psyr_2378	0.69	-3.1
2,758,220	-		Psyr_2378	0.69	-0.8
2,758,238	+		Psyr_2378	0.72	-1.8
2,758,239	-		Psyr_2378	0.72	-0.2
2,758,239	-		Psyr_2378	0.72	-1.2
2,758,352	+		Psyr_2378	0.86	-0.2
2,758,353	-		Psyr_2378	0.86	+0.2
2,758,470	+				-1.6
2,758,471	-				-0.8