Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2348

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,723,715	+				+0.2
2,723,761	+				-1.4
2,723,961	-		Psyr_2347	0.19	-1.7
2,723,970	-		Psyr_2347	0.21	-0.4
2,724,061	-		Psyr_2347	0.35	-2.7
2,724,128	-		Psyr_2347	0.45	-2.0
2,724,258	-		Psyr_2347	0.65	-2.0
2,724,258	-		Psyr_2347	0.65	-2.1
2,724,311	+				-1.7
2,724,471	+				-1.4
2,724,509	-				-3.2
2,724,627	-				+1.6
2,724,649	+				-0.4
2,724,677	+				+0.6
2,724,692	+				-3.4
2,724,849	-		Psyr_2348	0.30	+0.3
2,724,878	-		Psyr_2348	0.34	-0.6
2,725,195	-		Psyr_2348	0.76	-1.8
2,725,206	+		Psyr_2348	0.77	-3.0
2,725,207	-		Psyr_2348	0.78	+1.4
2,725,207	-		Psyr_2348	0.78	-0.8
2,725,220	+		Psyr_2348	0.79	-1.8
2,725,287	+		Psyr_2348	0.88	-0.4
2,725,288	-		Psyr_2348	0.88	+0.2
2,725,335	+				-1.8
2,725,339	-				+0.3
2,725,340	+				-0.3
2,725,340	+				-0.4
2,725,340	+				+0.2
2,725,341	-				-1.4
2,725,341	-				+0.0
2,725,345	+				-0.1
2,725,381	-				-1.9
2,725,387	-				-0.6
2,725,432	+				-1.5
2,725,467	-				+1.7
2,725,508	+				+0.2
2,725,509	-				-0.7
2,725,514	+				+2.0
2,725,533	+				+0.6
2,725,534	-				-1.8
2,725,599	-				-0.2
2,725,599	-				-0.1
2,725,605	-				+0.2
2,725,795	-				-0.4
2,725,805	+				-0.6
2,725,805	+				+0.4
2,725,805	+				+0.8
2,725,805	+				+2.1
2,725,805	+				-0.2
2,725,805	+				+0.8
2,725,805	+				-1.0
2,725,806	-				-1.8
2,725,806	-				-0.4
2,725,806	-				-2.0
2,725,842	+				-1.7
2,725,842	+				+0.2
2,725,842	+				+1.6
2,725,843	-				-2.4
2,725,910	+		Psyr_2349	0.28	+1.6
2,726,126	+				+0.6
2,726,126	+				-0.0
2,726,168	-				-1.9
2,726,168	-				-2.3
2,726,173	+				-2.0
2,726,173	+				+0.7
2,726,174	-				-2.4
2,726,180	+				+0.4
2,726,180	+				-1.7
2,726,180	+				+0.6
2,726,180	+				-0.5
2,726,181	-				-1.0
2,726,181	-				-0.4
2,726,181	-				-1.2
2,726,181	-				+0.8
2,726,181	-				-2.9
2,726,181	-				-3.2
2,726,210	+				-0.5
2,726,211	-				-0.8
2,726,236	-				+0.3
2,726,242	+				+0.1
2,726,268	-				-1.0
2,726,288	+				-0.0