Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2346

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,721,767	-		Psyr_2345	0.40	-0.6
2,721,976	+		Psyr_2345	0.54	-0.6
2,722,039	+		Psyr_2345	0.58	-1.0
2,722,172	-		Psyr_2345	0.66	-2.0
2,722,272	+		Psyr_2345	0.73	-1.0
2,722,302	+		Psyr_2345	0.75	-2.2
2,722,347	+		Psyr_2345	0.78	-0.8
2,722,350	+		Psyr_2345	0.78	-0.7
2,722,350	+		Psyr_2345	0.78	-0.3
2,722,351	-		Psyr_2345	0.78	-1.2
2,722,351	-		Psyr_2345	0.78	+0.4
2,722,444	-		Psyr_2345	0.84	-1.7
2,722,447	+		Psyr_2345	0.84	+1.6
2,722,447	+		Psyr_2345	0.84	-1.2
2,722,597	+				+0.7
2,722,597	+				-0.3
2,722,598	-				-4.1
2,722,657	+				+1.5
2,722,687	+				-1.1
2,722,687	+				+0.8
2,722,688	-				-2.4
2,722,688	-				+0.6
2,722,688	-				-3.6
2,722,688	-				-2.0
2,722,689	+				-0.2
2,722,689	+				-0.8
2,722,689	+				-0.0
2,722,690	-				-2.9
2,722,690	-				-1.0
2,722,690	-				+2.2
2,722,694	+				-2.4
2,722,694	+				-1.1
2,722,694	+				-0.4
2,722,737	+				-1.2
2,722,738	-				-3.5
2,722,755	-				-2.7
2,722,769	+				-1.6
2,722,803	-		Psyr_2346	0.13	-2.4
2,722,822	+		Psyr_2346	0.15	-0.5
2,722,854	+		Psyr_2346	0.19	+1.3
2,722,854	+		Psyr_2346	0.19	-0.2
2,722,923	-		Psyr_2346	0.27	-2.2
2,722,923	-		Psyr_2346	0.27	-1.9
2,722,990	-		Psyr_2346	0.34	-1.4
2,723,070	+		Psyr_2346	0.43	-1.4
2,723,070	+		Psyr_2346	0.43	-1.4
2,723,075	-		Psyr_2346	0.44	-1.9
2,723,121	+		Psyr_2346	0.49	-0.3
2,723,121	+		Psyr_2346	0.49	-1.9
2,723,221	+		Psyr_2346	0.61	-0.0
2,723,222	-		Psyr_2346	0.61	-0.6
2,723,389	+		Psyr_2346	0.80	-2.4
2,723,389	+		Psyr_2346	0.80	+0.3
2,723,390	-		Psyr_2346	0.80	-2.0
2,723,396	+		Psyr_2346	0.81	-2.6
2,723,401	-		Psyr_2346	0.81	-3.1
2,723,401	-		Psyr_2346	0.81	-3.4
2,723,401	-		Psyr_2346	0.81	-2.6
2,723,442	-		Psyr_2346	0.86	-0.0
2,723,445	+		Psyr_2346	0.86	-0.4
2,723,446	-		Psyr_2346	0.86	-2.2
2,723,601	+				-1.4
2,723,602	-				-2.7
2,723,715	+				+0.2
2,723,761	+				-1.4
2,723,961	-		Psyr_2347	0.19	-1.7
2,723,970	-		Psyr_2347	0.21	-0.4
2,724,061	-		Psyr_2347	0.35	-2.7
2,724,128	-		Psyr_2347	0.45	-2.0
2,724,258	-		Psyr_2347	0.65	-2.0
2,724,258	-		Psyr_2347	0.65	-2.1
2,724,311	+				-1.7
2,724,471	+				-1.4
2,724,509	-				-3.2