Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2243

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,606,685	-		Psyr_2241	0.73	+0.4
2,606,769	+		Psyr_2241	0.77	+0.6
2,606,769	+		Psyr_2241	0.77	-0.3
2,606,769	+		Psyr_2241	0.77	-0.4
2,606,770	-		Psyr_2241	0.77	-0.6
2,606,770	-		Psyr_2241	0.77	+0.8
2,606,770	-		Psyr_2241	0.77	+1.3
2,606,770	-		Psyr_2241	0.77	-0.6
2,606,770	-		Psyr_2241	0.77	-0.3
2,606,802	+		Psyr_2241	0.79	-0.7
2,606,803	-		Psyr_2241	0.79	+0.2
2,606,803	-		Psyr_2241	0.79	-1.7
2,606,803	-		Psyr_2241	0.79	+0.0
2,607,061	-				-0.1
2,607,061	-				-0.4
2,607,061	-				-0.7
2,607,061	-				-0.4
2,607,174	+				+1.0
2,607,174	+				+0.2
2,607,223	-				+0.9
2,607,223	-				-0.4
2,607,223	-				-0.6
2,607,246	+				+0.7
2,607,246	+				-0.9
2,607,247	-				+0.1
2,607,247	-				-0.4
2,607,247	-				-0.4
2,607,307	-				+0.1
2,607,390	+				-0.9
2,607,390	+				-0.3
2,607,390	+				-2.5
2,607,390	+				+0.6
2,607,391	-				+0.4
2,607,391	-				+0.9
2,607,391	-				+0.1
2,607,391	-				-0.3
2,607,391	-				+0.9
2,607,443	+		Psyr_2242	0.26	+0.1
2,607,443	+		Psyr_2242	0.26	+0.3
2,607,443	+		Psyr_2242	0.26	+0.0
2,607,443	+		Psyr_2242	0.26	+0.6
2,607,444	-		Psyr_2242	0.27	+0.6
2,607,444	-		Psyr_2242	0.27	+0.0
2,607,444	-		Psyr_2242	0.27	+1.1
2,607,645	+				-0.4
2,607,666	-				-0.2
2,607,838	+		Psyr_2243	0.41	-1.0
2,607,838	+		Psyr_2243	0.41	-1.4
2,607,838	+		Psyr_2243	0.41	+1.8
2,607,839	-		Psyr_2243	0.41	-1.1
2,607,839	-		Psyr_2243	0.41	-1.2
2,607,959	+		Psyr_2243	0.71	-0.9
2,607,960	-		Psyr_2243	0.71	-1.4
2,607,960	-		Psyr_2243	0.71	-1.3
2,608,015	+		Psyr_2243	0.85	+0.9
2,608,081	+				+0.3
2,608,081	+				-1.4
2,608,082	-				+1.4
2,608,082	-				-1.0
2,608,082	-				+0.4
2,608,141	+				-0.7
2,608,289	+				+1.3
2,608,289	+				-1.7
2,608,290	-				+0.6
2,608,290	-				-0.3
2,608,924	+		Psyr_2244	0.40	+1.7
2,608,957	-		Psyr_2244	0.41	+1.3