Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2182

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,535,935	+		Psyr_2181	0.67	-0.0
2,535,935	+		Psyr_2181	0.67	+0.0
2,535,936	-		Psyr_2181	0.67	-1.0
2,536,057	+		Psyr_2181	0.78	+0.4
2,536,058	-		Psyr_2181	0.78	-0.4
2,536,058	-		Psyr_2181	0.78	-0.4
2,536,129	+		Psyr_2181	0.84	-1.3
2,536,129	+		Psyr_2181	0.84	+0.8
2,536,129	+		Psyr_2181	0.84	-0.1
2,536,130	-		Psyr_2181	0.84	-0.2
2,536,130	-		Psyr_2181	0.84	-1.7
2,536,169	+		Psyr_2181	0.88	-1.1
2,536,169	+		Psyr_2181	0.88	+2.7
2,536,464	+				-0.8
2,536,465	-				-0.1
2,536,544	-				-0.7
2,536,601	+				+0.0
2,536,751	+				-2.4
2,536,752	-				-1.7
2,536,777	+				+0.2
2,536,778	-				+1.2
2,536,788	+				-1.3
2,536,808	+				-1.1
2,536,808	+				-2.3
2,536,809	-				-2.4
2,536,809	-				+0.5
2,536,947	+				+1.0
2,536,950	+				+0.9
2,536,975	-		Psyr_2182	0.15	-0.2
2,537,053	+		Psyr_2182	0.37	-1.6
2,537,054	-		Psyr_2182	0.37	+0.6
2,537,063	+		Psyr_2182	0.40	-0.4
2,537,063	+		Psyr_2182	0.40	-0.1
2,537,063	+		Psyr_2182	0.40	-1.0
2,537,063	+		Psyr_2182	0.40	-2.0
2,537,063	+		Psyr_2182	0.40	-2.2
2,537,063	+		Psyr_2182	0.40	+0.2
2,537,063	+		Psyr_2182	0.40	-0.1
2,537,063	+		Psyr_2182	0.40	+0.6
2,537,063	+		Psyr_2182	0.40	-0.8
2,537,063	+		Psyr_2182	0.40	-1.4
2,537,063	+		Psyr_2182	0.40	+0.6
2,537,063	+		Psyr_2182	0.40	-1.5
2,537,063	+		Psyr_2182	0.40	+0.6
2,537,063	+		Psyr_2182	0.40	+0.4
2,537,064	-		Psyr_2182	0.40	-1.0
2,537,064	-		Psyr_2182	0.40	-2.7
2,537,128	+		Psyr_2182	0.58	+0.2
2,537,129	-		Psyr_2182	0.58	-2.4
2,537,164	-		Psyr_2182	0.68	-1.3
2,537,164	-		Psyr_2182	0.68	-1.0
2,537,281	+				-0.7
2,537,281	+				-1.7
2,537,281	+				-1.6
2,537,281	+				-0.7
2,537,281	+				-2.6
2,537,281	+				-1.8
2,537,282	-				-2.4
2,537,282	-				+0.2
2,537,282	-				-0.4
2,537,282	-				-2.7
2,537,285	+				-1.8
2,537,285	+				-0.3
2,537,285	+				-0.2
2,537,285	+				-0.1
2,537,285	+				-1.9
2,537,285	+				-1.6
2,537,285	+				+0.6
2,537,285	+				-0.7
2,537,286	-				-2.4
2,537,286	-				-1.4
2,537,286	-				+0.1
2,537,286	-				-1.0
2,537,286	-				+0.0
2,537,286	-				-2.1
2,537,286	-				-2.0
2,537,397	-				+0.8
2,537,397	-				-1.6
2,537,426	+				+0.6
2,537,864	+		Psyr_2183	0.57	-1.0
2,537,864	+		Psyr_2183	0.57	-1.0
2,537,864	+		Psyr_2183	0.57	+0.2
2,537,865	-		Psyr_2183	0.57	-0.2
2,537,865	-		Psyr_2183	0.57	-0.4
2,537,865	-		Psyr_2183	0.57	-0.7
2,537,865	-		Psyr_2183	0.57	-0.5
2,537,900	+		Psyr_2183	0.62	+0.5