Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2174

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,526,288	+				-2.2
2,526,288	+				-1.1
2,526,288	+				+0.6
2,526,288	+				+1.3
2,526,470	-		Psyr_2173	0.17	+0.6
2,526,483	+		Psyr_2173	0.18	+0.4
2,526,483	+		Psyr_2173	0.18	-1.0
2,526,483	+		Psyr_2173	0.18	-0.7
2,526,483	+		Psyr_2173	0.18	+0.5
2,526,483	+		Psyr_2173	0.18	-0.6
2,526,483	+		Psyr_2173	0.18	-1.4
2,526,484	-		Psyr_2173	0.18	-0.4
2,526,484	-		Psyr_2173	0.18	-1.2
2,526,484	-		Psyr_2173	0.18	+0.6
2,526,484	-		Psyr_2173	0.18	-0.9
2,526,484	-		Psyr_2173	0.18	-0.3
2,526,484	-		Psyr_2173	0.18	-0.4
2,526,484	-		Psyr_2173	0.18	+1.3
2,526,841	+		Psyr_2173	0.57	-0.6
2,526,841	+		Psyr_2173	0.57	+1.6
2,526,862	-		Psyr_2173	0.59	+1.0
2,526,862	-		Psyr_2173	0.59	-0.4
2,526,993	+		Psyr_2173	0.73	+0.0
2,527,014	-		Psyr_2173	0.75	-0.3
2,527,246	-				+0.2
2,527,251	-				-0.1
2,527,251	-				-0.4
2,527,441	-		Psyr_2174	0.26	+1.2
2,527,956	+				-1.0
2,527,956	+				-1.2
2,527,956	+				+1.3
2,527,956	+				+0.2
2,528,058	+				+0.6
2,528,098	+				-0.0
2,528,141	+				-1.4
2,528,161	+				+0.1
2,528,161	+				-0.4
2,528,162	-				+0.2
2,528,162	-				+0.4
2,528,162	-				+1.3
2,528,162	-				-0.4
2,528,162	-				+1.2
2,528,162	-				+0.0
2,528,162	-				+1.9
2,528,162	-				+0.2
2,528,196	-		Psyr_2175	0.11	-1.1
2,528,196	-		Psyr_2175	0.11	-0.1
2,528,302	+		Psyr_2175	0.20	-1.0
2,528,449	+		Psyr_2175	0.32	+0.6
2,528,450	-		Psyr_2175	0.32	-1.4
2,528,456	+		Psyr_2175	0.33	-0.4
2,528,456	+		Psyr_2175	0.33	+1.2
2,528,456	+		Psyr_2175	0.33	-1.8
2,528,457	-		Psyr_2175	0.33	+0.1
2,528,598	+		Psyr_2175	0.44	-0.8
2,528,604	+		Psyr_2175	0.45	-0.6
2,528,605	-		Psyr_2175	0.45	-1.4
2,528,605	-		Psyr_2175	0.45	+1.2
2,528,607	+		Psyr_2175	0.45	+0.3
2,528,607	+		Psyr_2175	0.45	-0.3
2,528,607	+		Psyr_2175	0.45	-1.0
2,528,607	+		Psyr_2175	0.45	+1.0
2,528,608	-		Psyr_2175	0.45	-1.0
2,528,608	-		Psyr_2175	0.45	-1.6
2,528,608	-		Psyr_2175	0.45	+0.6
2,528,608	-		Psyr_2175	0.45	-0.4
2,528,715	+		Psyr_2175	0.54	-1.0
2,528,716	-		Psyr_2175	0.54	-0.6
2,528,716	-		Psyr_2175	0.54	-0.1
2,528,721	+		Psyr_2175	0.54	-2.0
2,528,721	+		Psyr_2175	0.54	-0.3
2,528,721	+		Psyr_2175	0.54	-2.4
2,528,721	+		Psyr_2175	0.54	+0.6
2,528,721	+		Psyr_2175	0.54	-0.9
2,528,722	-		Psyr_2175	0.54	-0.6
2,528,722	-		Psyr_2175	0.54	+0.3
2,528,722	-		Psyr_2175	0.54	+0.2
2,528,722	-		Psyr_2175	0.54	-0.7
2,528,832	+		Psyr_2175	0.63	+0.7