Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2154

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,509,280	+				-0.5
2,509,280	+				-0.6
2,509,280	+				+0.0
2,509,281	-				-0.3
2,509,281	-				-0.3
2,509,281	-				+1.2
2,509,281	-				-1.7
2,509,281	-				-2.1
2,509,281	-				-0.1
2,509,295	-				-0.1
2,509,298	+				+1.6
2,509,298	+				-0.6
2,509,298	+				+0.9
2,509,298	+				+0.6
2,509,298	+				-1.2
2,509,298	+				+0.2
2,509,299	-				+1.6
2,509,299	-				-1.2
2,509,299	-				-1.6
2,509,299	-				-0.4
2,509,299	-				-0.9
2,509,299	-				-1.3
2,509,299	-				-0.7
2,509,697	+		Psyr_2153	0.47	+1.4
2,510,263	-				-1.0
2,510,352	+		Psyr_2154	0.13	+2.5
2,510,352	+		Psyr_2154	0.13	-2.6
2,510,353	-		Psyr_2154	0.13	-0.2
2,510,436	+		Psyr_2154	0.21	-0.1
2,510,437	-		Psyr_2154	0.21	-1.0
2,510,539	-		Psyr_2154	0.31	-0.7
2,510,629	+		Psyr_2154	0.40	+0.1
2,510,629	+		Psyr_2154	0.40	-1.2
2,510,630	-		Psyr_2154	0.40	-1.4
2,510,630	-		Psyr_2154	0.40	-0.5
2,510,630	-		Psyr_2154	0.40	-1.1
2,510,633	+		Psyr_2154	0.41	-0.7
2,510,633	+		Psyr_2154	0.41	-0.4
2,510,633	+		Psyr_2154	0.41	-0.2
2,510,633	+				+2.2
2,510,634	-		Psyr_2154	0.41	-2.0
2,510,712	+		Psyr_2154	0.48	-1.4
2,510,712	+		Psyr_2154	0.48	+1.4
2,510,712	+		Psyr_2154	0.48	+1.3
2,510,712	+		Psyr_2154	0.48	-1.3
2,510,712	+		Psyr_2154	0.48	-1.0
2,510,713	-		Psyr_2154	0.48	-0.7
2,510,763	-		Psyr_2154	0.53	-1.7
2,511,281	-				-0.5
2,511,286	+				+1.3
2,511,286	+				+0.8
2,511,287	-				-0.9
2,511,287	-				+0.4
2,511,289	+				+0.4
2,511,289	+				-0.5
2,511,289	+				+0.6
2,511,289	+				-0.1
2,511,289	+				+2.2
2,511,290	-				-0.7
2,511,290	-				-1.0
2,511,290	-				+1.6
2,511,290	-				-0.4
2,511,795	+		Psyr_2155	0.57	-0.4
2,511,796	-		Psyr_2155	0.57	-1.5
2,511,810	+		Psyr_2155	0.59	-0.3
2,511,980	+		Psyr_2155	0.77	-0.2
2,511,981	-		Psyr_2155	0.78	-0.8
2,511,981	-		Psyr_2155	0.78	+2.9
2,512,165	+				-1.4