Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2065

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,409,916	+				+0.3
2,409,923	+				+0.2
2,409,923	+				+0.6
2,409,923	+				-0.2
2,409,923	+				+0.2
2,409,923	+				-1.0
2,409,924	-				-3.1
2,409,924	-				-1.0
2,409,964	-				+0.3
2,410,377	+				+1.1
2,410,378	-				-0.7
2,410,378	-				-1.6
2,410,435	-				+1.2
2,410,461	-				-0.5
2,410,538	+		Psyr_2064	0.27	-0.4
2,410,691	+		Psyr_2064	0.74	+0.2
2,410,691	+		Psyr_2064	0.74	+1.1
2,410,691	+		Psyr_2064	0.74	-0.9
2,410,691	+		Psyr_2064	0.74	-0.4
2,410,692	-		Psyr_2064	0.74	+0.1
2,410,692	-		Psyr_2064	0.74	+0.6
2,410,736	+		Psyr_2064	0.87	-0.4
2,410,737	-		Psyr_2064	0.88	+0.8
2,410,737	-		Psyr_2064	0.88	+0.6
2,410,737	-		Psyr_2064	0.88	-0.2
2,410,739	+		Psyr_2064	0.88	-0.3
2,410,739	+		Psyr_2064	0.88	-0.6
2,410,783	+				+0.0
2,410,784	-				+0.8
2,410,784	-				-0.1
2,410,882	+		Psyr_2065	0.12	-0.3
2,410,973	-		Psyr_2065	0.31	-0.5
2,411,147	-		Psyr_2065	0.68	-0.3
2,411,173	+		Psyr_2065	0.73	-0.9
2,411,173	+		Psyr_2065	0.73	-0.8
2,411,173	+		Psyr_2065	0.73	+0.4
2,411,173	+		Psyr_2065	0.73	-0.1
2,411,174	-				+0.6
2,411,174	-		Psyr_2065	0.74	-1.5
2,411,174	-		Psyr_2065	0.74	-1.8
2,411,174	-		Psyr_2065	0.74	-0.4
2,411,174	-		Psyr_2065	0.74	-0.9
2,411,174	-		Psyr_2065	0.74	-1.7
2,411,174	-		Psyr_2065	0.74	-0.7
2,411,174	-		Psyr_2065	0.74	-0.9
2,411,350	+				+0.4
2,411,352	+				+0.6
2,411,352	+				-1.2
2,411,352	+				-0.7
2,411,353	-				-0.4
2,411,353	-				-0.7
2,411,353	-				+1.2
2,411,360	+				+0.4
2,411,360	+				-1.7
2,411,360	+				+0.6
2,411,360	+				-1.6
2,411,361	-				+0.9
2,411,361	-				+0.4
2,411,361	-				+0.4
2,411,361	-				-0.2
2,411,387	-				+1.3
2,411,387	-				+0.6
2,411,448	+				+0.2
2,411,449	-				+0.1
2,411,496	+				+0.1
2,411,793	+		Psyr_2066	0.16	+0.6
2,411,794	-		Psyr_2066	0.16	+0.1
2,411,888	-		Psyr_2066	0.20	-0.3
2,411,902	+		Psyr_2066	0.20	-0.4