Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1942

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,214,509	+		Psyr_1941	0.36	+0.4
2,214,685	+		Psyr_1941	0.51	+0.6
2,215,306	-				-0.6
2,215,314	+				+1.6
2,215,314	+				-0.5
2,215,314	+				-0.4
2,215,315	-				-0.9
2,215,315	-				+0.3
2,215,315	-				-0.4
2,215,315	-				+1.1
2,215,320	+				+1.6
2,215,320	+				+0.3
2,215,320	+				+1.3
2,215,320	+				+0.2
2,215,323	+				+1.9
2,215,324	-				-0.9
2,215,364	+				-0.4
2,215,372	+				-0.3
2,215,501	+				+0.0
2,215,501	+				+0.1
2,215,501	+				-2.3
2,215,502	-				-2.5
2,215,545	-		Psyr_1942	0.16	-0.5
2,215,548	+		Psyr_1942	0.17	+2.2
2,215,662	+		Psyr_1942	0.38	-0.5
2,215,689	-		Psyr_1942	0.43	-3.2
2,215,734	+		Psyr_1942	0.52	-1.0
2,215,735	-		Psyr_1942	0.52	-0.6
2,215,830	+		Psyr_1942	0.70	+1.1
2,215,831	-		Psyr_1942	0.70	+0.6
2,215,831	-		Psyr_1942	0.70	-2.0
2,215,831	-		Psyr_1942	0.70	+0.6
2,215,897	-		Psyr_1942	0.83	-0.7
2,216,195	-		Psyr_1943	0.24	+1.0
2,216,338	+		Psyr_1943	0.51	+1.6
2,216,338	+		Psyr_1943	0.51	+0.6
2,216,338	+		Psyr_1943	0.51	+0.3
2,216,339	-		Psyr_1943	0.51	-0.7
2,216,339	-		Psyr_1943	0.51	+1.1
2,216,404	+		Psyr_1943	0.63	-0.9
2,216,405	-		Psyr_1943	0.64	-1.1
2,216,405	-		Psyr_1943	0.64	-1.4
2,216,536	+		Psyr_1943	0.88	-0.9
2,216,536	+		Psyr_1943	0.88	-0.7
2,216,536	+		Psyr_1943	0.88	-0.9
2,216,536	+		Psyr_1943	0.88	+1.2
2,216,536	+		Psyr_1943	0.88	+0.1
2,216,537	-		Psyr_1943	0.88	+0.6
2,216,537	-		Psyr_1943	0.88	-0.4
2,216,537	-		Psyr_1943	0.88	+0.8
2,216,537	-		Psyr_1943	0.88	+2.2
2,216,576	+				-1.2
2,216,577	-				-0.7
2,216,577	-				+0.5
2,216,577	-				-1.4
2,216,586	+				-0.9
2,216,587	-				+1.3
2,216,620	+				-0.6
2,216,727	+				+1.0
2,216,773	+				+0.4
2,216,774	-				+1.3
2,216,777	+				+0.4
2,216,778	-				-0.8
2,216,838	+				+0.5
2,216,839	-				-1.8
2,216,885	+				+0.3
2,216,886	-				+0.2
2,216,886	-				+0.2
2,216,956	+				-0.7
2,216,980	+				+0.3
2,216,980	+				-1.4
2,216,980	+				+2.1
2,216,981	-				-1.2
2,216,981	-				+1.4
2,216,981	-				+0.7