Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1919

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,191,951	-		Psyr_1918	0.35	+0.1
2,191,972	+		Psyr_1918	0.37	+0.9
2,191,982	+		Psyr_1918	0.38	-1.3
2,191,982	+		Psyr_1918	0.38	-0.9
2,191,982	+		Psyr_1918	0.38	-0.3
2,191,983	-		Psyr_1918	0.38	-0.3
2,191,983	-		Psyr_1918	0.38	+0.4
2,191,983	-		Psyr_1918	0.38	+0.5
2,191,983	-		Psyr_1918	0.38	-2.1
2,191,985	-		Psyr_1918	0.38	+0.7
2,192,135	+		Psyr_1918	0.51	-0.1
2,192,135	+		Psyr_1918	0.51	+1.3
2,192,135	+		Psyr_1918	0.51	-1.1
2,192,136	-		Psyr_1918	0.51	+0.7
2,192,232	+		Psyr_1918	0.60	-0.6
2,192,232	+		Psyr_1918	0.60	-0.7
2,192,233	-		Psyr_1918	0.60	-0.8
2,192,233	-		Psyr_1918	0.60	-1.7
2,192,233	-		Psyr_1918	0.60	-0.2
2,192,233	-		Psyr_1918	0.60	-2.1
2,192,276	-		Psyr_1918	0.64	+0.4
2,192,383	+		Psyr_1918	0.73	-0.1
2,192,383	+		Psyr_1918	0.73	+0.4
2,192,384	-		Psyr_1918	0.73	+0.6
2,192,384	-		Psyr_1918	0.73	-0.2
2,192,385	+		Psyr_1918	0.73	-1.1
2,192,385	+		Psyr_1918	0.73	-0.3
2,192,385	+		Psyr_1918	0.73	+0.1
2,192,385	+		Psyr_1918	0.73	+0.1
2,192,386	-		Psyr_1918	0.73	-0.2
2,192,386	-		Psyr_1918	0.73	-0.1
2,192,386	-		Psyr_1918	0.73	+0.9
2,192,386	-		Psyr_1918	0.73	-0.3
2,192,399	-		Psyr_1918	0.75	+1.5
2,192,522	+		Psyr_1918	0.85	-1.9
2,192,556	-		Psyr_1918	0.88	+1.7
2,192,650	+				-1.5
2,192,650	+				-0.5
2,192,829	+		Psyr_1919	0.13	-0.8
2,192,829	+		Psyr_1919	0.13	+0.7
2,192,830	-		Psyr_1919	0.14	-0.5
2,192,830	-		Psyr_1919	0.14	+1.2
2,192,880	+		Psyr_1919	0.28	-3.2
2,192,880	+		Psyr_1919	0.28	-1.5
2,192,880	+		Psyr_1919	0.28	+0.2
2,192,880	+		Psyr_1919	0.28	-1.5
2,192,880	+		Psyr_1919	0.28	+0.5
2,192,881	-		Psyr_1919	0.28	-1.3
2,192,881	-		Psyr_1919	0.28	-1.5
2,192,881	-		Psyr_1919	0.28	-0.6
2,192,881	-		Psyr_1919	0.28	-3.0
2,192,881	-		Psyr_1919	0.28	-2.1
2,192,884	+		Psyr_1919	0.29	+0.2
2,192,884	+		Psyr_1919	0.29	-0.5
2,192,884	+		Psyr_1919	0.29	-0.9
2,192,884	+		Psyr_1919	0.29	-1.5
2,192,884	+		Psyr_1919	0.29	-1.7
2,192,885	-		Psyr_1919	0.29	-1.7
2,192,885	-		Psyr_1919	0.29	+1.7
2,192,885	-		Psyr_1919	0.29	-0.1
2,192,885	-		Psyr_1919	0.29	-1.4
2,192,885	-		Psyr_1919	0.29	+0.7
2,192,885	-		Psyr_1919	0.29	-0.9
2,192,976	-		Psyr_1919	0.54	-0.1
2,193,058	+		Psyr_1919	0.77	-0.3
2,193,125	+				+0.4
2,193,125	+				-2.1
2,193,125	+				+0.2
2,193,125	+				-1.2
2,193,125	+				-2.7
2,193,125	+				-2.3
2,193,125	+				-0.3
2,193,125	+				-1.8
2,193,125	+				-0.9
2,193,125	+				-2.7
2,193,125	+				+0.1
2,193,125	+				-1.5
2,193,125	+				-0.1
2,193,125	+				-0.6
2,193,125	+				-1.0
2,193,125	+				-1.1
2,193,125	+				+0.0
2,193,125	+				-1.7
2,193,125	+				-1.1
2,193,125	+				+0.1
2,193,125	+				+0.2
2,193,125	+				-0.5
2,193,125	+				-0.7
2,193,125	+				-2.4
2,193,125	+				+0.2
2,193,125	+				+0.9
2,193,125	+				-2.7
2,193,125	+				+0.0
2,193,126	-				-0.3
2,193,126	-				+1.7
2,193,126	-				-0.0
2,193,126	-				+0.7
2,193,126	-				-0.3
2,193,126	-				-2.1
2,193,126	-				-0.9
2,193,126	-				+0.3
2,193,126	-				+0.4
2,193,126	-				-0.3
2,193,126	-				+0.2
2,193,126	-				-0.9
2,193,126	-				+0.7
2,193,126	-				+0.8
2,193,126	-				+0.5
2,193,126	-				+1.4
2,193,126	-				-0.2
2,193,126	-				+1.0
2,193,126	-				-1.5
2,193,126	-				+0.5
2,193,126	-				+0.7
2,193,126	-				-1.5
2,193,126	-				+2.0
2,193,126	-				-1.2
2,193,126	-				+0.4
2,193,126	-				-1.1
2,193,234	+				-0.3
2,193,459	-		Psyr_1920	0.38	+1.1
2,193,499	+		Psyr_1920	0.42	-2.3
2,193,595	+		Psyr_1920	0.54	+1.2
2,193,596	-		Psyr_1920	0.54	+0.9
2,193,596	-		Psyr_1920	0.54	+0.2
2,193,619	+				-1.1
2,193,629	+		Psyr_1920	0.58	-0.3
2,193,630	-		Psyr_1920	0.58	+0.2
2,193,630	-		Psyr_1920	0.58	+0.2
2,193,738	+		Psyr_1920	0.72	-1.3
2,193,739	-		Psyr_1920	0.72	-1.8
2,193,921	+				-0.3
2,193,921	+				+3.0
2,193,921	+				-0.2
2,193,939	+				+2.2
2,193,939	+				-1.2
2,193,939	+				-0.6
2,193,940	-				-0.1
2,193,994	-				+0.7
2,193,994	-				+1.0
2,193,994	-				+1.7
2,194,084	-				+0.7
2,194,084	-				-1.1