Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1885

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,154,844	+		Psyr_1883	0.51	+1.2
2,154,844	+		Psyr_1883	0.51	-0.1
2,154,844	+		Psyr_1883	0.51	+3.0
2,154,845	-		Psyr_1883	0.52	-0.3
2,154,845	-		Psyr_1883	0.52	-0.5
2,154,848	+		Psyr_1883	0.53	-2.6
2,154,872	+		Psyr_1883	0.62	+0.7
2,154,982	+				-0.6
2,154,982	+				-0.0
2,155,141	+				+0.1
2,155,141	+				-0.7
2,155,142	-				+0.9
2,155,142	-				-0.2
2,155,174	+				-0.2
2,155,174	+				+0.8
2,155,174	+				-1.3
2,155,174	+				-0.3
2,155,174	+				+0.7
2,155,175	-				+2.1
2,155,175	-				+0.9
2,155,175	-				-1.1
2,155,250	+				-0.3
2,155,250	+				+1.3
2,155,250	+				+0.3
2,155,250	+				+2.3
2,155,250	+				-2.4
2,155,250	+				-0.8
2,155,250	+				+2.3
2,155,251	-				+0.9
2,155,251	-				+1.0
2,155,251	-				+0.1
2,155,251	-				-1.3
2,155,251	-				-0.4
2,155,251	-				-0.1
2,155,258	+				+1.3
2,155,266	+				-0.6
2,155,308	+				+1.1
2,155,308	+				-0.7
2,155,308	+				+1.0
2,155,309	-				+0.9
2,155,309	-				+0.7
2,155,338	-				-0.9
2,155,375	+				+0.5
2,155,427	-				+0.4
2,155,435	+				-1.1
2,155,436	-				-0.1
2,155,437	+				+0.4
2,155,437	+				+0.7
2,155,437	+				-0.4
2,155,437	+				-2.0
2,155,437	+				-2.1
2,155,437	+				-0.6
2,155,437	+				-0.5
2,155,438	-				+1.0
2,155,438	-				+1.7
2,155,438	-				+0.1
2,155,438	-				+1.2
2,155,438	-				+0.7
2,155,511	+				-0.9
2,155,529	+				+1.2
2,155,529	+				-0.6
2,155,529	+				+0.2
2,155,529	+				+0.1
2,155,533	+				+0.3
2,155,559	+		Psyr_1884	0.11	+0.4
2,155,559	+		Psyr_1884	0.11	+0.3
2,155,560	-		Psyr_1884	0.12	-0.5
2,155,560	-		Psyr_1884	0.12	+1.0
2,155,560	-		Psyr_1884	0.12	-0.0
2,155,560	-		Psyr_1884	0.12	-0.1
2,155,560	-		Psyr_1884	0.12	-0.5
2,155,560	-		Psyr_1884	0.12	-0.1
2,155,560	-		Psyr_1884	0.12	-1.3
2,155,592	-		Psyr_1884	0.29	+0.6
2,155,682	+		Psyr_1884	0.79	-0.5
2,155,682	+		Psyr_1884	0.79	+0.2
2,155,696	+		Psyr_1884	0.87	+0.4
2,155,696	+		Psyr_1884	0.87	+1.2
2,155,696	+		Psyr_1884	0.87	-0.0
2,155,696	+		Psyr_1884	0.87	+0.5
2,155,697	-		Psyr_1884	0.88	+0.1
2,155,697	-		Psyr_1884	0.88	-0.3
2,155,697	-		Psyr_1884	0.88	+1.3
2,155,697	-		Psyr_1884	0.88	+0.1
2,155,736	+				+0.7
2,155,748	+				-0.3
2,155,748	+				+1.2
2,155,748	+				+1.0
2,155,749	-				+0.1
2,155,879	+		Psyr_1885	0.53	+0.9
2,155,880	-		Psyr_1885	0.54	-0.1
2,155,880	-		Psyr_1885	0.54	-2.1
2,155,913	-		Psyr_1885	0.75	-1.9
2,155,980	+				+0.8
2,155,980	+				+0.2
2,155,980	+				-0.0
2,155,981	-				-2.2
2,155,981	-				-1.5
2,155,981	-				-0.2
2,155,990	+				-0.3
2,155,991	-				-0.9
2,155,991	-				-0.3
2,156,079	+				-0.2
2,156,079	+				-1.6
2,156,079	+				-0.8
2,156,079	+				+0.1
2,156,079	+				-2.6
2,156,080	-				-0.9
2,156,080	-				-0.9
2,156,080	-				-1.5
2,156,080	-				-0.0
2,156,080	-				+0.0
2,156,080	-				-0.9
2,156,080	-				-1.1
2,156,080	-				+0.5
2,156,080	-				-0.3
2,156,088	+				-1.2
2,156,096	+				+1.0
2,156,120	+				-0.9
2,156,120	+				-1.5
2,156,121	-				+0.7
2,156,121	-				-1.2
2,156,121	-				+0.4
2,156,121	-				+0.5
2,156,133	+				+0.7
2,156,133	+				-2.6
2,156,161	-				+0.7
2,156,164	+				+0.1
2,156,165	-				+0.1
2,156,165	-				+1.3
2,156,165	-				-0.3
2,156,165	-				-0.3
2,156,172	+				-0.4
2,156,173	-				+0.5
2,156,203	+				-1.6
2,156,203	+				-2.2
2,156,204	-				-0.5
2,156,204	-				+1.5
2,156,204	-				+1.1
2,156,204	-				-0.9
2,156,256	+		Psyr_1886	0.12	-1.6
2,156,256	+		Psyr_1886	0.12	+1.3
2,156,256	+		Psyr_1886	0.12	-0.3
2,156,256	+		Psyr_1886	0.12	-0.1
2,156,256	+		Psyr_1886	0.12	+1.7
2,156,257	-		Psyr_1886	0.12	+0.4
2,156,257	-		Psyr_1886	0.12	-2.1
2,156,257	-		Psyr_1886	0.12	+0.8
2,156,257	-		Psyr_1886	0.12	-0.2
2,156,257	-		Psyr_1886	0.12	-0.3
2,156,257	-		Psyr_1886	0.12	+0.1
2,156,292	-		Psyr_1886	0.14	-0.3
2,156,295	+		Psyr_1886	0.14	+0.9
2,156,296	-		Psyr_1886	0.14	+1.0
2,156,296	-		Psyr_1886	0.14	-1.3
2,156,317	+		Psyr_1886	0.16	-0.5
2,156,318	-		Psyr_1886	0.16	-0.2
2,156,318	-		Psyr_1886	0.16	+0.2
2,156,362	+		Psyr_1886	0.19	-0.9
2,156,414	-		Psyr_1886	0.22	-0.5
2,156,420	+		Psyr_1886	0.23	-0.8
2,156,420	+		Psyr_1886	0.23	-1.0
2,156,420	+		Psyr_1886	0.23	-0.9
2,156,421	-		Psyr_1886	0.23	+0.9
2,156,484	-		Psyr_1886	0.27	-0.2
2,156,488	+		Psyr_1886	0.27	+0.7
2,156,488	+		Psyr_1886	0.27	-0.1
2,156,489	-		Psyr_1886	0.27	-1.0
2,156,489	-		Psyr_1886	0.27	-0.2
2,156,489	-		Psyr_1886	0.27	-0.9
2,156,489	-		Psyr_1886	0.27	-0.5
2,156,489	-		Psyr_1886	0.27	-1.6
2,156,489	-		Psyr_1886	0.27	-0.1
2,156,512	+		Psyr_1886	0.29	-0.6
2,156,512	+		Psyr_1886	0.29	-1.0
2,156,512	+		Psyr_1886	0.29	-0.2
2,156,513	-		Psyr_1886	0.29	+1.0
2,156,513	-		Psyr_1886	0.29	-0.3
2,156,513	-		Psyr_1886	0.29	+1.1
2,156,558	+		Psyr_1886	0.32	+0.9
2,156,558	+		Psyr_1886	0.32	-1.8
2,156,559	-		Psyr_1886	0.32	+0.2
2,156,588	+		Psyr_1886	0.34	+0.4
2,156,589	-		Psyr_1886	0.34	-0.6
2,156,589	-		Psyr_1886	0.34	-0.2
2,156,589	-		Psyr_1886	0.34	-2.0
2,156,589	-		Psyr_1886	0.34	+0.3
2,156,589	-		Psyr_1886	0.34	-0.9
2,156,606	+		Psyr_1886	0.35	-2.1
2,156,606	+		Psyr_1886	0.35	-0.9
2,156,644	+		Psyr_1886	0.38	-0.9
2,156,645	-		Psyr_1886	0.38	+0.1
2,156,645	-		Psyr_1886	0.38	+2.7
2,156,665	+		Psyr_1886	0.39	+0.3
2,156,665	+		Psyr_1886	0.39	+0.4
2,156,665	+		Psyr_1886	0.39	+0.5
2,156,666	-		Psyr_1886	0.39	+0.5
2,156,666	-		Psyr_1886	0.39	-0.9
2,156,666	-		Psyr_1886	0.39	+1.3
2,156,695	-		Psyr_1886	0.41	-2.8
2,156,702	-		Psyr_1886	0.42	+1.5
2,156,723	+		Psyr_1886	0.43	+2.0
2,156,723	+		Psyr_1886	0.43	+0.7
2,156,764	-		Psyr_1886	0.46	+0.1
2,156,785	+		Psyr_1886	0.47	-1.6
2,156,785	+		Psyr_1886	0.47	+0.7
2,156,786	-		Psyr_1886	0.47	+0.3
2,156,845	-		Psyr_1886	0.51	+0.7
2,156,876	+		Psyr_1886	0.53	-1.3
2,156,876	+		Psyr_1886	0.53	-0.1
2,156,876	+		Psyr_1886	0.53	-0.4
2,156,876	+		Psyr_1886	0.53	-0.1
2,156,876	+		Psyr_1886	0.53	+1.0
2,156,876	+		Psyr_1886	0.53	+0.8
2,156,876	+		Psyr_1886	0.53	+0.1
2,156,876	+		Psyr_1886	0.53	+1.0
2,156,876	+		Psyr_1886	0.53	-0.0
2,156,876	+		Psyr_1886	0.53	-0.1
2,156,876	+		Psyr_1886	0.53	-0.3
2,156,877	-		Psyr_1886	0.53	-0.5
2,156,877	-		Psyr_1886	0.53	+0.2
2,156,877	-		Psyr_1886	0.53	+0.4
2,156,877	-		Psyr_1886	0.53	-1.3
2,156,877	-		Psyr_1886	0.53	-1.1
2,156,877	-		Psyr_1886	0.53	-1.5
2,156,877	-		Psyr_1886	0.53	-0.3
2,156,877	-		Psyr_1886	0.53	+0.6
2,156,920	+		Psyr_1886	0.56	+0.7
2,156,938	+		Psyr_1886	0.57	-1.4
2,156,938	+		Psyr_1886	0.57	+0.4
2,156,938	+		Psyr_1886	0.57	+0.7
2,156,938	+		Psyr_1886	0.57	-1.1
2,156,939	-		Psyr_1886	0.58	-0.7
2,156,939	-		Psyr_1886	0.58	-0.2
2,156,939	-		Psyr_1886	0.58	-1.0
2,156,939	-		Psyr_1886	0.58	-0.3
2,156,939	-		Psyr_1886	0.58	+0.2
2,156,939	-		Psyr_1886	0.58	-1.9
2,156,939	-		Psyr_1886	0.58	+0.5
2,156,944	+		Psyr_1886	0.58	+1.5
2,156,944	+		Psyr_1886	0.58	-1.9