Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1809

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,081,767	+		Psyr_1808	0.21	-0.3
2,081,767	+		Psyr_1808	0.21	+1.4
2,081,767	+		Psyr_1808	0.21	+0.7
2,081,767	+		Psyr_1808	0.21	-0.8
2,081,767	+		Psyr_1808	0.21	+0.5
2,081,768	-		Psyr_1808	0.22	+0.5
2,081,823	+		Psyr_1808	0.32	+0.3
2,081,823	+		Psyr_1808	0.32	+0.5
2,081,824	-		Psyr_1808	0.32	+0.0
2,081,824	-		Psyr_1808	0.32	-0.4
2,081,824	-		Psyr_1808	0.32	+0.7
2,081,824	-				-0.9
2,081,824	-		Psyr_1808	0.32	+1.1
2,082,099	+		Psyr_1808	0.86	-2.8
2,082,099	+		Psyr_1808	0.86	-0.9
2,082,099	+		Psyr_1808	0.86	-0.0
2,082,099	+		Psyr_1808	0.86	-0.1
2,082,099	+		Psyr_1808	0.86	+1.2
2,082,099	+		Psyr_1808	0.86	+0.7
2,082,099	+		Psyr_1808	0.86	-1.3
2,082,100	-		Psyr_1808	0.86	+1.0
2,082,100	-		Psyr_1808	0.86	+0.1
2,082,100	-		Psyr_1808	0.86	+1.5
2,082,100	-		Psyr_1808	0.86	-0.9
2,082,100	-		Psyr_1808	0.86	-0.6
2,082,100	-		Psyr_1808	0.86	-0.6
2,082,368	+		Psyr_1809	0.21	-1.3
2,082,396	-		Psyr_1809	0.24	+0.3
2,082,533	+		Psyr_1809	0.39	+0.2
2,082,533	+		Psyr_1809	0.39	-0.5
2,082,533	+		Psyr_1809	0.39	-1.5
2,082,534	-		Psyr_1809	0.39	-1.1
2,082,534	-		Psyr_1809	0.39	+0.7
2,082,534	-		Psyr_1809	0.39	+0.2
2,082,701	+		Psyr_1809	0.57	-0.8
2,083,139	+				-0.2
2,083,139	+				+0.5
2,083,192	+				-0.2
2,083,192	+				-0.9
2,083,200	+				+0.5
2,083,221	+				+0.5
2,083,221	+				-2.3
2,083,222	-				-0.2
2,083,253	+				+0.4
2,083,287	+				+1.0
2,083,287	+				+1.7
2,083,288	-				+0.1
2,083,389	+				-0.9
2,083,390	-				+1.7
2,083,390	-				+0.7
2,083,396	+				+0.5
2,083,419	+				-0.5
2,083,420	-				-0.4
2,083,442	+				+0.8
2,083,442	+				-0.3
2,083,442	+				-1.6
2,083,519	+				-0.6
2,083,520	-				-0.9
2,083,520	-				-0.2
2,083,613	+		Psyr_1810	0.33	-0.5
2,083,705	-		Psyr_1810	0.59	+0.7
2,083,837	-				-0.5
2,083,837	-				+0.5
2,083,852	+				-1.3
2,083,852	+				+0.4
2,083,853	-				-0.3
2,083,853	-				-0.3
2,083,894	+				-0.0
2,083,915	+				+0.4
2,083,915	+				-0.4
2,083,916	-				+0.5
2,083,916	-				+0.7
2,083,916	-				+0.8
2,083,916	-				+1.2
2,083,916	-				-0.9
2,084,007	-				+0.9