Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1780

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
2,027,987	-		Psyr_1778	0.87	+0.3
2,028,309	-				+0.4
2,028,419	+				-1.0
2,028,419	+				-0.4
2,028,419	+				+0.1
2,028,420	-				-1.2
2,028,521	-		Psyr_1779	0.34	+0.1
2,028,521	-		Psyr_1779	0.34	-0.2
2,028,521	-		Psyr_1779	0.34	+0.5
2,028,773	+				-1.1
2,028,773	+				-0.3
2,028,773	+				+0.2
2,028,774	-				-1.1
2,028,871	+				+0.9
2,028,871	+				-0.2
2,028,871	+				-1.1
2,028,871	+				+1.0
2,028,871	+				+0.1
2,028,871	+				-0.4
2,028,872	-				+1.3
2,028,872	-				+0.7
2,028,872	-				-0.5
2,028,872	-				-1.0
2,028,872	-				+1.2
2,028,872	-				-1.3
2,028,872	-				-0.5
2,028,886	-				+0.7
2,028,899	-				-0.3
2,028,992	+		Psyr_1780	0.19	-2.3
2,029,112	+		Psyr_1780	0.38	-1.6
2,029,113	-		Psyr_1780	0.38	+1.7
2,029,113	-		Psyr_1780	0.38	-0.0
2,029,452	+				-2.0
2,029,452	+				+1.1
2,029,453	-				-1.1
2,029,523	+				+0.7
2,029,524	-				-0.2
2,029,583	+				+1.0
2,029,586	+				-2.6
2,029,587	-				+1.1
2,029,679	-				-0.7
2,029,679	-				+2.3
2,029,775	+				-0.8
2,029,775	+				-0.3
2,029,775	+				-1.4
2,029,779	-				-0.2
2,029,839	-				+0.5
2,029,904	+		Psyr_1781	0.12	+0.3
2,029,904	+		Psyr_1781	0.12	+0.7
2,029,904	+		Psyr_1781	0.12	-0.7
2,029,904	+		Psyr_1781	0.12	+0.1
2,029,904	+		Psyr_1781	0.12	-0.1
2,029,905	-		Psyr_1781	0.12	+1.4
2,029,905	-		Psyr_1781	0.12	-0.3
2,030,016	-		Psyr_1781	0.16	+0.2
2,030,021	+		Psyr_1781	0.16	-0.1
2,030,021	+		Psyr_1781	0.16	+0.1
2,030,021	+		Psyr_1781	0.16	+0.1
2,030,022	-		Psyr_1781	0.16	+0.2
2,030,022	-		Psyr_1781	0.16	-0.4
2,030,022	-		Psyr_1781	0.16	+2.0
2,030,031	-		Psyr_1781	0.17	+0.5
2,030,031	-		Psyr_1781	0.17	+0.1
2,030,031	-		Psyr_1781	0.17	+1.0
2,030,114	+		Psyr_1781	0.20	+0.4
2,030,115	-		Psyr_1781	0.20	+0.4
2,030,115	-		Psyr_1781	0.20	-1.9
2,030,150	+		Psyr_1781	0.21	-1.3
2,030,150	+		Psyr_1781	0.21	-0.2
2,030,151	-		Psyr_1781	0.21	+0.4
2,030,151	-		Psyr_1781	0.21	+0.1
2,030,151	-		Psyr_1781	0.21	+0.3
2,030,172	-		Psyr_1781	0.22	+0.4
2,030,180	+		Psyr_1781	0.22	-0.4
2,030,180	+		Psyr_1781	0.22	+0.1
2,030,180	+		Psyr_1781	0.22	+0.2
2,030,181	-		Psyr_1781	0.22	+0.7
2,030,181	-		Psyr_1781	0.22	+0.2
2,030,181	-		Psyr_1781	0.22	-0.3
2,030,254	+		Psyr_1781	0.25	-0.9
2,030,254	+		Psyr_1781	0.25	-1.1
2,030,254	+		Psyr_1781	0.25	+0.5
2,030,255	-		Psyr_1781	0.25	-0.7
2,030,363	-		Psyr_1781	0.29	+0.2
2,030,498	+		Psyr_1781	0.34	-0.1
2,030,498	+		Psyr_1781	0.34	-1.3