Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1749

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1748 and Psyr_1749 are separated by 207 nucleotidesPsyr_1749 and Psyr_1750 are separated by 146 nucleotidesPsyr_1750 and Psyr_1751 are separated by 205 nucleotides Psyr_1748: Psyr_1748 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,985,531 to 1,986,814 _1748 Psyr_1749: Psyr_1749 - ATP-dependent proteinase, Serine peptidase, MEROPS family S16, at 1,987,022 to 1,989,418 _1749 Psyr_1750: Psyr_1750 - bacterial nucleoid protein HU beta subunit, at 1,989,565 to 1,989,837 _1750 Psyr_1751: Psyr_1751 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 1,990,043 to 1,991,926 _1751 Position (kb) 1987 1988 1989 1990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1986.054 kb on + strand, within Psyr_1748at 1986.054 kb on + strand, within Psyr_1748at 1986.054 kb on + strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.080 kb on + strand, within Psyr_1748at 1986.080 kb on + strand, within Psyr_1748at 1986.259 kb on + strand, within Psyr_1748at 1986.260 kb on - strand, within Psyr_1748at 1986.272 kb on - strand, within Psyr_1748at 1986.501 kb on + strand, within Psyr_1748at 1986.543 kb on - strand, within Psyr_1748at 1986.686 kb on + strandat 1986.686 kb on + strandat 1986.686 kb on + strandat 1986.686 kb on + strandat 1986.686 kb on + strandat 1986.770 kb on + strandat 1986.771 kb on - strandat 1986.771 kb on - strandat 1986.771 kb on - strandat 1986.839 kb on + strandat 1986.839 kb on + strandat 1986.839 kb on + strandat 1986.839 kb on + strandat 1986.839 kb on + strandat 1986.839 kb on + strandat 1986.840 kb on - strandat 1986.840 kb on - strandat 1986.842 kb on + strandat 1986.932 kb on + strandat 1986.978 kb on - strandat 1987.074 kb on - strandat 1987.214 kb on + strandat 1987.215 kb on - strandat 1987.239 kb on + strandat 1987.430 kb on + strand, within Psyr_1749at 1987.431 kb on - strand, within Psyr_1749at 1987.692 kb on - strand, within Psyr_1749at 1987.694 kb on + strand, within Psyr_1749at 1987.694 kb on + strand, within Psyr_1749at 1987.695 kb on - strand, within Psyr_1749at 1987.695 kb on - strand, within Psyr_1749at 1987.889 kb on + strand, within Psyr_1749at 1987.889 kb on + strand, within Psyr_1749at 1987.890 kb on - strand, within Psyr_1749at 1987.890 kb on - strand, within Psyr_1749at 1987.935 kb on + strand, within Psyr_1749at 1987.935 kb on + strand, within Psyr_1749at 1987.936 kb on - strand, within Psyr_1749at 1987.936 kb on - strand, within Psyr_1749at 1987.936 kb on - strand, within Psyr_1749at 1987.936 kb on - strand, within Psyr_1749at 1987.982 kb on + strand, within Psyr_1749at 1987.983 kb on - strand, within Psyr_1749at 1988.018 kb on + strand, within Psyr_1749at 1988.018 kb on + strand, within Psyr_1749at 1988.018 kb on + strand, within Psyr_1749at 1988.019 kb on - strand, within Psyr_1749at 1988.073 kb on + strand, within Psyr_1749at 1988.073 kb on + strand, within Psyr_1749at 1988.201 kb on + strand, within Psyr_1749at 1988.201 kb on + strand, within Psyr_1749at 1988.201 kb on + strand, within Psyr_1749at 1988.201 kb on + strand, within Psyr_1749at 1988.202 kb on - strand, within Psyr_1749at 1988.202 kb on - strand, within Psyr_1749at 1988.202 kb on - strand, within Psyr_1749at 1988.202 kb on - strand, within Psyr_1749at 1988.202 kb on - strand, within Psyr_1749at 1988.375 kb on + strand, within Psyr_1749at 1988.376 kb on - strand, within Psyr_1749at 1988.376 kb on - strand, within Psyr_1749at 1988.391 kb on - strand, within Psyr_1749at 1988.522 kb on + strand, within Psyr_1749at 1988.522 kb on + strand, within Psyr_1749at 1988.522 kb on + strand, within Psyr_1749at 1988.522 kb on + strand, within Psyr_1749at 1988.523 kb on - strand, within Psyr_1749at 1988.612 kb on + strand, within Psyr_1749at 1988.612 kb on + strand, within Psyr_1749at 1988.613 kb on - strand, within Psyr_1749at 1988.613 kb on - strand, within Psyr_1749at 1989.256 kb on + strandat 1989.352 kb on + strandat 1989.406 kb on + strandat 1989.406 kb on + strandat 1989.416 kb on + strandat 1989.416 kb on + strandat 1989.459 kb on + strandat 1989.461 kb on + strandat 1989.461 kb on + strandat 1989.551 kb on + strandat 1989.561 kb on + strandat 1989.709 kb on - strand, within Psyr_1750at 1989.835 kb on + strandat 1989.982 kb on + strandat 1989.982 kb on + strandat 1990.021 kb on + strandat 1990.021 kb on + strandat 1990.021 kb on + strandat 1990.021 kb on + strandat 1990.022 kb on - strandat 1990.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,986,054 + Psyr_1748 0.41 +1.7
1,986,054 + Psyr_1748 0.41 -1.3
1,986,054 + Psyr_1748 0.41 -3.0
1,986,055 - Psyr_1748 0.41 -2.1
1,986,055 - Psyr_1748 0.41 -2.8
1,986,055 - Psyr_1748 0.41 -2.6
1,986,080 + Psyr_1748 0.43 +0.7
1,986,080 + Psyr_1748 0.43 -1.6
1,986,259 + Psyr_1748 0.57 +0.7
1,986,260 - Psyr_1748 0.57 -2.6
1,986,272 - Psyr_1748 0.58 -2.3
1,986,501 + Psyr_1748 0.76 +0.2
1,986,543 - Psyr_1748 0.79 -0.9
1,986,686 + -1.3
1,986,686 + -0.1
1,986,686 + -1.0
1,986,686 + +0.7
1,986,686 + -1.3
1,986,770 + -0.3
1,986,771 - -2.8
1,986,771 - -0.3
1,986,771 - -0.9
1,986,839 + -0.5
1,986,839 + +0.7
1,986,839 + +0.0
1,986,839 + +0.7
1,986,839 + -0.9
1,986,839 + -0.7
1,986,840 - -2.5
1,986,840 - -1.3
1,986,842 + -0.7
1,986,932 + -0.7
1,986,978 - -0.6
1,987,074 - +0.7
1,987,214 + -0.0
1,987,215 - -0.2
1,987,239 + -0.8
1,987,430 + Psyr_1749 0.17 -1.8
1,987,431 - Psyr_1749 0.17 +0.1
1,987,692 - Psyr_1749 0.28 -2.5
1,987,694 + Psyr_1749 0.28 +0.7
1,987,694 + Psyr_1749 0.28 +0.7
1,987,695 - Psyr_1749 0.28 +1.7
1,987,695 - Psyr_1749 0.28 -1.1
1,987,889 + Psyr_1749 0.36 -0.5
1,987,889 + Psyr_1749 0.36 -0.2
1,987,890 - Psyr_1749 0.36 +1.7
1,987,890 - Psyr_1749 0.36 -1.2
1,987,935 + Psyr_1749 0.38 +0.4
1,987,935 + Psyr_1749 0.38 -0.6
1,987,936 - Psyr_1749 0.38 -0.3
1,987,936 - Psyr_1749 0.38 -0.0
1,987,936 - Psyr_1749 0.38 -2.1
1,987,936 - Psyr_1749 0.38 -0.9
1,987,982 + Psyr_1749 0.40 -1.3
1,987,983 - Psyr_1749 0.40 -0.3
1,988,018 + Psyr_1749 0.42 +0.1
1,988,018 + Psyr_1749 0.42 -1.6
1,988,018 + Psyr_1749 0.42 -0.9
1,988,019 - Psyr_1749 0.42 -1.6
1,988,073 + Psyr_1749 0.44 -0.3
1,988,073 + Psyr_1749 0.44 -1.3
1,988,201 + Psyr_1749 0.49 -1.6
1,988,201 + Psyr_1749 0.49 -0.3
1,988,201 + Psyr_1749 0.49 +0.7
1,988,201 + Psyr_1749 0.49 -2.1
1,988,202 - Psyr_1749 0.49 +0.3
1,988,202 - Psyr_1749 0.49 -0.3
1,988,202 - Psyr_1749 0.49 -0.3
1,988,202 - Psyr_1749 0.49 -0.9
1,988,202 - Psyr_1749 0.49 -1.5
1,988,375 + Psyr_1749 0.56 +0.3
1,988,376 - Psyr_1749 0.56 -1.6
1,988,376 - Psyr_1749 0.56 -0.3
1,988,391 - Psyr_1749 0.57 -1.9
1,988,522 + Psyr_1749 0.63 -0.0
1,988,522 + Psyr_1749 0.63 -0.0
1,988,522 + Psyr_1749 0.63 -1.9
1,988,522 + Psyr_1749 0.63 +2.0
1,988,523 - Psyr_1749 0.63 +1.7
1,988,612 + Psyr_1749 0.66 +0.3
1,988,612 + Psyr_1749 0.66 -1.6
1,988,613 - Psyr_1749 0.66 -1.3
1,988,613 - Psyr_1749 0.66 -1.3
1,989,256 + -0.3
1,989,352 + -0.5
1,989,406 + -1.6
1,989,406 + -0.2
1,989,416 + -0.6
1,989,416 + -0.2
1,989,459 + +0.4
1,989,461 + +0.7
1,989,461 + -2.0
1,989,551 + -0.5
1,989,561 + -1.6
1,989,709 - Psyr_1750 0.53 -0.6
1,989,835 + +0.7
1,989,982 + +0.0
1,989,982 + +0.7
1,990,021 + +0.5
1,990,021 + -1.6
1,990,021 + -0.2
1,990,021 + -1.0
1,990,022 - +0.2
1,990,055 - -0.6

Or see this region's nucleotide sequence