Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1747

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1746 and Psyr_1747 are separated by 91 nucleotidesPsyr_1747 and Psyr_1748 are separated by 106 nucleotides Psyr_1746: Psyr_1746 - Trigger factor, at 1,983,381 to 1,984,691 _1746 Psyr_1747: Psyr_1747 - ATP-dependent Clp protease proteolytic subunit ClpP, at 1,984,783 to 1,985,424 _1747 Psyr_1748: Psyr_1748 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,985,531 to 1,986,814 _1748 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1984.041 kb on + strand, within Psyr_1746at 1984.532 kb on - strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.571 kb on - strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.604 kb on + strandat 1984.604 kb on + strandat 1984.604 kb on + strandat 1984.604 kb on + strandat 1984.647 kb on + strandat 1984.761 kb on + strandat 1984.762 kb on - strandat 1984.799 kb on - strandat 1984.882 kb on + strand, within Psyr_1747at 1984.891 kb on + strand, within Psyr_1747at 1984.892 kb on - strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.946 kb on - strand, within Psyr_1747at 1984.946 kb on - strand, within Psyr_1747at 1985.017 kb on + strand, within Psyr_1747at 1985.017 kb on + strand, within Psyr_1747at 1985.017 kb on + strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.423 kb on - strandat 1985.423 kb on - strandat 1985.573 kb on + strandat 1985.573 kb on + strandat 1985.574 kb on - strandat 1985.638 kb on + strandat 1985.719 kb on + strand, within Psyr_1748at 1985.719 kb on + strand, within Psyr_1748at 1985.720 kb on - strand, within Psyr_1748at 1985.766 kb on + strand, within Psyr_1748at 1985.767 kb on - strand, within Psyr_1748at 1985.810 kb on + strand, within Psyr_1748at 1985.810 kb on + strand, within Psyr_1748at 1985.811 kb on - strand, within Psyr_1748at 1985.819 kb on + strand, within Psyr_1748at 1985.949 kb on + strand, within Psyr_1748at 1985.993 kb on + strand, within Psyr_1748at 1985.994 kb on - strand, within Psyr_1748at 1986.054 kb on + strand, within Psyr_1748at 1986.054 kb on + strand, within Psyr_1748at 1986.054 kb on + strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.055 kb on - strand, within Psyr_1748at 1986.080 kb on + strand, within Psyr_1748at 1986.080 kb on + strand, within Psyr_1748at 1986.259 kb on + strand, within Psyr_1748at 1986.260 kb on - strand, within Psyr_1748at 1986.272 kb on - strand, within Psyr_1748

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,984,041 + Psyr_1746 0.50 +0.3
1,984,532 - Psyr_1746 0.88 -0.3
1,984,542 + Psyr_1746 0.89 +0.5
1,984,542 + Psyr_1746 0.89 -0.9
1,984,542 + Psyr_1746 0.89 -0.1
1,984,542 + Psyr_1746 0.89 -1.3
1,984,570 + -0.1
1,984,570 + +0.7
1,984,570 + -0.3
1,984,570 + -0.4
1,984,571 - +0.7
1,984,600 + +1.3
1,984,600 + -0.7
1,984,600 + +0.4
1,984,600 + +1.1
1,984,600 + +1.1
1,984,604 + +1.0
1,984,604 + +0.0
1,984,604 + +0.3
1,984,604 + -0.4
1,984,647 + +0.3
1,984,761 + +0.0
1,984,762 - -1.3
1,984,799 - -0.3
1,984,882 + Psyr_1747 0.15 -0.9
1,984,891 + Psyr_1747 0.17 -0.3
1,984,892 - Psyr_1747 0.17 -0.9
1,984,945 + Psyr_1747 0.25 -1.2
1,984,946 - Psyr_1747 0.25 -0.9
1,984,946 - Psyr_1747 0.25 -0.3
1,985,017 + Psyr_1747 0.36 -2.8
1,985,017 + Psyr_1747 0.36 +1.7
1,985,017 + Psyr_1747 0.36 -1.6
1,985,018 - Psyr_1747 0.37 -0.3
1,985,018 - Psyr_1747 0.37 -2.1
1,985,018 - Psyr_1747 0.37 -0.9
1,985,018 - Psyr_1747 0.37 -0.3
1,985,018 - Psyr_1747 0.37 +1.0
1,985,423 - -1.6
1,985,423 - -1.0
1,985,573 + -2.3
1,985,573 + +0.1
1,985,574 - -2.1
1,985,638 + -1.9
1,985,719 + Psyr_1748 0.15 -0.9
1,985,719 + Psyr_1748 0.15 -0.5
1,985,720 - Psyr_1748 0.15 -0.7
1,985,766 + Psyr_1748 0.18 -0.9
1,985,767 - Psyr_1748 0.18 -2.1
1,985,810 + Psyr_1748 0.22 +2.0
1,985,810 + Psyr_1748 0.22 -0.3
1,985,811 - Psyr_1748 0.22 -1.3
1,985,819 + Psyr_1748 0.22 -0.9
1,985,949 + Psyr_1748 0.33 -2.6
1,985,993 + Psyr_1748 0.36 +0.7
1,985,994 - Psyr_1748 0.36 -1.6
1,986,054 + Psyr_1748 0.41 +1.7
1,986,054 + Psyr_1748 0.41 -1.3
1,986,054 + Psyr_1748 0.41 -3.0
1,986,055 - Psyr_1748 0.41 -2.1
1,986,055 - Psyr_1748 0.41 -2.8
1,986,055 - Psyr_1748 0.41 -2.6
1,986,080 + Psyr_1748 0.43 +0.7
1,986,080 + Psyr_1748 0.43 -1.6
1,986,259 + Psyr_1748 0.57 +0.7
1,986,260 - Psyr_1748 0.57 -2.6
1,986,272 - Psyr_1748 0.58 -2.3

Or see this region's nucleotide sequence