Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1656

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1655 and Psyr_1656 are separated by 304 nucleotidesPsyr_1656 and Psyr_1657 are separated by 146 nucleotidesPsyr_1657 and Psyr_1658 are separated by 123 nucleotides Psyr_1655: Psyr_1655 - TatD-related deoxyribonuclease, at 1,859,037 to 1,859,822 _1655 Psyr_1656: Psyr_1656 - Lysine exporter protein (LYSE/YGGA), at 1,860,127 to 1,860,780 _1656 Psyr_1657: Psyr_1657 - transcriptional regulator, TetR family, at 1,860,927 to 1,861,589 _1657 Psyr_1658: Psyr_1658 - lipoprotein, putative, at 1,861,713 to 1,862,315 _1658 Position (kb) 1860 1861Strain fitness (log2 ratio) -2 -1 0 1at 1859.335 kb on - strand, within Psyr_1655at 1859.335 kb on - strand, within Psyr_1655at 1859.340 kb on + strand, within Psyr_1655at 1859.341 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.658 kb on + strand, within Psyr_1655at 1859.703 kb on + strand, within Psyr_1655at 1859.703 kb on + strand, within Psyr_1655at 1859.704 kb on - strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.707 kb on + strand, within Psyr_1655at 1859.708 kb on - strand, within Psyr_1655at 1859.708 kb on - strand, within Psyr_1655at 1859.751 kb on + strandat 1859.751 kb on + strandat 1859.910 kb on - strandat 1859.910 kb on - strandat 1859.943 kb on - strandat 1859.943 kb on - strandat 1859.983 kb on + strandat 1859.983 kb on + strandat 1859.984 kb on - strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.987 kb on + strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1859.988 kb on - strandat 1860.050 kb on + strandat 1860.051 kb on - strandat 1860.051 kb on - strandat 1860.051 kb on - strandat 1860.316 kb on + strand, within Psyr_1656at 1860.316 kb on + strand, within Psyr_1656at 1860.316 kb on + strand, within Psyr_1656at 1860.317 kb on - strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.679 kb on + strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.680 kb on - strand, within Psyr_1656at 1860.706 kb on + strand, within Psyr_1656at 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.718 kb on + strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.719 kb on - strandat 1860.778 kb on + strandat 1860.779 kb on - strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.852 kb on + strandat 1860.853 kb on - strandat 1860.853 kb on - strandat 1860.873 kb on - strandat 1860.888 kb on + strandat 1860.888 kb on + strandat 1860.889 kb on - strandat 1860.889 kb on - strandat 1860.891 kb on + strandat 1860.944 kb on + strandat 1860.944 kb on + strandat 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.077 kb on + strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.078 kb on - strand, within Psyr_1657at 1861.107 kb on + strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.108 kb on - strand, within Psyr_1657at 1861.200 kb on + strand, within Psyr_1657at 1861.392 kb on + strand, within Psyr_1657at 1861.392 kb on + strand, within Psyr_1657at 1861.393 kb on - strand, within Psyr_1657at 1861.393 kb on - strand, within Psyr_1657at 1861.395 kb on + strand, within Psyr_1657at 1861.396 kb on - strand, within Psyr_1657at 1861.401 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.423 kb on + strand, within Psyr_1657at 1861.424 kb on - strand, within Psyr_1657at 1861.424 kb on - strand, within Psyr_1657at 1861.443 kb on + strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.444 kb on - strand, within Psyr_1657at 1861.697 kb on + strandat 1861.697 kb on + strandat 1861.711 kb on + strandat 1861.718 kb on + strandat 1861.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,859,335 - Psyr_1655 0.38 +0.2
1,859,335 - Psyr_1655 0.38 -0.3
1,859,340 + Psyr_1655 0.39 +0.2
1,859,341 - Psyr_1655 0.39 +0.2
1,859,551 - Psyr_1655 0.65 -1.3
1,859,551 - Psyr_1655 0.65 -1.1
1,859,553 + Psyr_1655 0.66 -0.3
1,859,553 + Psyr_1655 0.66 +0.6
1,859,553 + Psyr_1655 0.66 +0.0
1,859,554 - Psyr_1655 0.66 -0.8
1,859,554 - Psyr_1655 0.66 -0.2
1,859,554 - Psyr_1655 0.66 +0.4
1,859,554 - Psyr_1655 0.66 -0.4
1,859,658 + Psyr_1655 0.79 +1.1
1,859,703 + Psyr_1655 0.85 +0.9
1,859,703 + Psyr_1655 0.85 -1.3
1,859,704 - Psyr_1655 0.85 -1.6
1,859,707 + Psyr_1655 0.85 -0.7
1,859,707 + Psyr_1655 0.85 +0.7
1,859,707 + Psyr_1655 0.85 -0.9
1,859,707 + Psyr_1655 0.85 -0.2
1,859,707 + Psyr_1655 0.85 +0.3
1,859,707 + Psyr_1655 0.85 -0.7
1,859,708 - Psyr_1655 0.85 -0.8
1,859,708 - Psyr_1655 0.85 +0.7
1,859,751 + +0.2
1,859,751 + +0.3
1,859,910 - -1.3
1,859,910 - -0.2
1,859,943 - -0.1
1,859,943 - +0.3
1,859,983 + +0.0
1,859,983 + +0.1
1,859,984 - +1.3
1,859,987 + +0.0
1,859,987 + -0.8
1,859,987 + -0.7
1,859,988 - -0.4
1,859,988 - +0.9
1,859,988 - +0.3
1,859,988 - +0.9
1,860,050 + -0.3
1,860,051 - -1.4
1,860,051 - +0.7
1,860,051 - +0.0
1,860,316 + Psyr_1656 0.29 -1.1
1,860,316 + Psyr_1656 0.29 -2.3
1,860,316 + Psyr_1656 0.29 +1.7
1,860,317 - Psyr_1656 0.29 -2.3
1,860,679 + Psyr_1656 0.84 -0.1
1,860,679 + Psyr_1656 0.84 -0.3
1,860,679 + Psyr_1656 0.84 -0.3
1,860,679 + Psyr_1656 0.84 -0.4
1,860,679 + Psyr_1656 0.84 -0.4
1,860,679 + Psyr_1656 0.84 -0.7
1,860,680 - Psyr_1656 0.85 +1.7
1,860,680 - Psyr_1656 0.85 +0.1
1,860,680 - Psyr_1656 0.85 -0.3
1,860,680 - Psyr_1656 0.85 +0.5
1,860,680 - Psyr_1656 0.85 -0.6
1,860,680 - Psyr_1656 0.85 -0.5
1,860,680 - Psyr_1656 0.85 -0.3
1,860,680 - Psyr_1656 0.85 -0.4
1,860,680 - Psyr_1656 0.85 -0.8
1,860,706 + Psyr_1656 0.89 -1.0
1,860,718 + +0.0
1,860,718 + +0.1
1,860,718 + +0.1
1,860,718 + +0.3
1,860,718 + -0.5
1,860,719 - +0.6
1,860,719 - -0.3
1,860,719 - -0.3
1,860,719 - -0.3
1,860,719 - +1.7
1,860,719 - +1.2
1,860,719 - +1.3
1,860,719 - -0.1
1,860,719 - -0.5
1,860,719 - -0.8
1,860,719 - +0.4
1,860,719 - -0.6
1,860,719 - -0.5
1,860,719 - -0.6
1,860,719 - +1.7
1,860,719 - +0.6
1,860,778 + +1.7
1,860,779 - +0.6
1,860,852 + -0.3
1,860,852 + +0.1
1,860,852 + +0.3
1,860,852 + +0.7
1,860,853 - -2.3
1,860,853 - -0.3
1,860,873 - -0.3
1,860,888 + -0.6
1,860,888 + -0.3
1,860,889 - +0.7
1,860,889 - -1.4
1,860,891 + -0.1
1,860,944 + -1.4
1,860,944 + +0.5
1,861,077 + Psyr_1657 0.23 -0.8
1,861,077 + Psyr_1657 0.23 +0.0
1,861,077 + Psyr_1657 0.23 +0.7
1,861,077 + Psyr_1657 0.23 +0.7
1,861,077 + Psyr_1657 0.23 +0.7
1,861,078 - Psyr_1657 0.23 -0.8
1,861,078 - Psyr_1657 0.23 +0.7
1,861,078 - Psyr_1657 0.23 -0.6
1,861,078 - Psyr_1657 0.23 +0.2
1,861,078 - Psyr_1657 0.23 +0.0
1,861,078 - Psyr_1657 0.23 -0.5
1,861,107 + Psyr_1657 0.27 +1.1
1,861,108 - Psyr_1657 0.27 -0.8
1,861,108 - Psyr_1657 0.27 -0.4
1,861,108 - Psyr_1657 0.27 +0.1
1,861,200 + Psyr_1657 0.41 +0.5
1,861,392 + Psyr_1657 0.70 +0.1
1,861,392 + Psyr_1657 0.70 +0.0
1,861,393 - Psyr_1657 0.70 +0.9
1,861,393 - Psyr_1657 0.70 +0.2
1,861,395 + Psyr_1657 0.71 -0.8
1,861,396 - Psyr_1657 0.71 -0.7
1,861,401 + Psyr_1657 0.71 -0.3
1,861,423 + Psyr_1657 0.75 -0.2
1,861,423 + Psyr_1657 0.75 -0.5
1,861,423 + Psyr_1657 0.75 +0.3
1,861,423 + Psyr_1657 0.75 -0.7
1,861,424 - Psyr_1657 0.75 +0.7
1,861,424 - Psyr_1657 0.75 -1.1
1,861,443 + Psyr_1657 0.78 +0.4
1,861,444 - Psyr_1657 0.78 +1.3
1,861,444 - Psyr_1657 0.78 -0.7
1,861,444 - Psyr_1657 0.78 -0.4
1,861,697 + -0.7
1,861,697 + -0.7
1,861,711 + +0.3
1,861,718 + +0.3
1,861,727 + -0.1

Or see this region's nucleotide sequence