Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1619

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1617 and Psyr_1618 overlap by 1 nucleotidesPsyr_1618 and Psyr_1619 overlap by 11 nucleotidesPsyr_1619 and Psyr_1620 overlap by 8 nucleotides Psyr_1617: Psyr_1617 - conserved hypothetical protein, at 1,819,160 to 1,820,017 _1617 Psyr_1618: Psyr_1618 - Dihydrodipicolinate synthetase, at 1,820,017 to 1,820,814 _1618 Psyr_1619: Psyr_1619 - conserved hypothetical protein, at 1,820,804 to 1,821,322 _1619 Psyr_1620: Psyr_1620 - conserved hypothetical protein, at 1,821,315 to 1,822,511 _1620 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1820.086 kb on - strandat 1820.270 kb on + strand, within Psyr_1618at 1820.271 kb on - strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.299 kb on + strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.300 kb on - strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.420 kb on + strand, within Psyr_1618at 1820.421 kb on - strand, within Psyr_1618at 1820.421 kb on - strand, within Psyr_1618at 1820.431 kb on - strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.511 kb on + strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.512 kb on - strand, within Psyr_1618at 1820.699 kb on + strand, within Psyr_1618at 1820.699 kb on + strand, within Psyr_1618at 1820.805 kb on + strandat 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.859 kb on + strand, within Psyr_1619at 1820.860 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.966 kb on - strand, within Psyr_1619at 1820.968 kb on - strand, within Psyr_1619at 1821.074 kb on - strand, within Psyr_1619at 1821.075 kb on + strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.076 kb on - strand, within Psyr_1619at 1821.089 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.129 kb on + strand, within Psyr_1619at 1821.130 kb on - strand, within Psyr_1619at 1821.183 kb on - strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.216 kb on + strand, within Psyr_1619at 1821.217 kb on - strand, within Psyr_1619at 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.399 kb on + strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.400 kb on - strandat 1821.403 kb on + strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.404 kb on - strandat 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.439 kb on + strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.440 kb on - strand, within Psyr_1620at 1821.453 kb on + strand, within Psyr_1620at 1821.457 kb on + strand, within Psyr_1620at 1821.458 kb on - strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.478 kb on + strand, within Psyr_1620at 1821.479 kb on - strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.559 kb on + strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.560 kb on - strand, within Psyr_1620at 1821.661 kb on + strand, within Psyr_1620at 1821.662 kb on - strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strandat 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.724 kb on + strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.725 kb on - strand, within Psyr_1620at 1821.801 kb on - strand, within Psyr_1620at 1821.818 kb on - strand, within Psyr_1620at 1821.848 kb on - strand, within Psyr_1620at 1821.922 kb on + strand, within Psyr_1620at 1821.922 kb on + strand, within Psyr_1620at 1821.923 kb on - strand, within Psyr_1620at 1821.923 kb on - strand, within Psyr_1620at 1821.923 kb on - strand, within Psyr_1620at 1822.054 kb on + strand, within Psyr_1620at 1822.054 kb on + strand, within Psyr_1620at 1822.054 kb on + strand, within Psyr_1620at 1822.055 kb on - strand, within Psyr_1620at 1822.055 kb on - strand, within Psyr_1620at 1822.186 kb on + strand, within Psyr_1620at 1822.186 kb on + strand, within Psyr_1620at 1822.187 kb on - strand, within Psyr_1620at 1822.187 kb on - strand, within Psyr_1620at 1822.187 kb on - strand, within Psyr_1620at 1822.187 kb on - strand, within Psyr_1620at 1822.199 kb on + strand, within Psyr_1620at 1822.199 kb on + strand, within Psyr_1620at 1822.200 kb on - strand, within Psyr_1620at 1822.200 kb on - strand, within Psyr_1620at 1822.231 kb on + strand, within Psyr_1620at 1822.232 kb on - strand, within Psyr_1620at 1822.232 kb on - strand, within Psyr_1620at 1822.232 kb on - strand, within Psyr_1620at 1822.313 kb on - strand, within Psyr_1620

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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1,820,086 - +0.4
1,820,270 + Psyr_1618 0.32 +0.8
1,820,271 - Psyr_1618 0.32 -0.2
1,820,299 + Psyr_1618 0.35 -0.2
1,820,299 + Psyr_1618 0.35 +0.8
1,820,299 + Psyr_1618 0.35 +0.8
1,820,299 + Psyr_1618 0.35 -0.6
1,820,299 + Psyr_1618 0.35 +0.3
1,820,299 + Psyr_1618 0.35 +0.8
1,820,299 + Psyr_1618 0.35 -1.4
1,820,299 + Psyr_1618 0.35 +0.3
1,820,299 + Psyr_1618 0.35 -0.6
1,820,300 - Psyr_1618 0.35 +0.8
1,820,300 - Psyr_1618 0.35 +0.8
1,820,300 - Psyr_1618 0.35 -0.9
1,820,300 - Psyr_1618 0.35 +0.5
1,820,420 + Psyr_1618 0.51 -0.5
1,820,420 + Psyr_1618 0.51 +0.4
1,820,420 + Psyr_1618 0.51 +1.4
1,820,420 + Psyr_1618 0.51 +1.1
1,820,420 + Psyr_1618 0.51 +0.4
1,820,420 + Psyr_1618 0.51 -0.1
1,820,420 + Psyr_1618 0.51 -0.4
1,820,420 + Psyr_1618 0.51 -2.6
1,820,420 + Psyr_1618 0.51 +3.6
1,820,420 + Psyr_1618 0.51 -1.0
1,820,421 - Psyr_1618 0.51 -1.3
1,820,421 - Psyr_1618 0.51 -0.6
1,820,431 - Psyr_1618 0.52 -0.4
1,820,511 + Psyr_1618 0.62 +0.6
1,820,511 + Psyr_1618 0.62 +1.5
1,820,511 + Psyr_1618 0.62 +0.5
1,820,512 - Psyr_1618 0.62 -0.7
1,820,512 - Psyr_1618 0.62 +0.5
1,820,512 - Psyr_1618 0.62 -0.6
1,820,512 - Psyr_1618 0.62 -0.0
1,820,699 + Psyr_1618 0.85 -0.1
1,820,699 + Psyr_1618 0.85 -0.2
1,820,805 + +0.2
1,820,859 + Psyr_1619 0.11 -1.4
1,820,859 + Psyr_1619 0.11 +0.9
1,820,859 + Psyr_1619 0.11 -0.4
1,820,859 + Psyr_1619 0.11 +0.8
1,820,860 - Psyr_1619 0.11 +3.1
1,820,966 - Psyr_1619 0.31 +0.5
1,820,966 - Psyr_1619 0.31 -0.7
1,820,966 - Psyr_1619 0.31 +0.6
1,820,968 - Psyr_1619 0.32 +0.3
1,821,074 - Psyr_1619 0.52 +0.3
1,821,075 + Psyr_1619 0.52 +0.3
1,821,076 - Psyr_1619 0.52 -0.6
1,821,076 - Psyr_1619 0.52 -0.8
1,821,076 - Psyr_1619 0.52 +0.7
1,821,089 + Psyr_1619 0.55 +1.4
1,821,129 + Psyr_1619 0.63 -1.0
1,821,129 + Psyr_1619 0.63 +0.2
1,821,129 + Psyr_1619 0.63 +0.4
1,821,129 + Psyr_1619 0.63 +0.1
1,821,130 - Psyr_1619 0.63 +1.2
1,821,183 - Psyr_1619 0.73 +0.9
1,821,216 + Psyr_1619 0.79 +2.3
1,821,216 + Psyr_1619 0.79 -0.4
1,821,216 + Psyr_1619 0.79 +0.3
1,821,217 - Psyr_1619 0.80 -0.6
1,821,399 + -1.0
1,821,399 + -1.3
1,821,399 + +0.8
1,821,399 + -0.1
1,821,399 + -0.2
1,821,399 + +0.3
1,821,399 + +0.4
1,821,400 - -0.4
1,821,400 - +0.9
1,821,400 - +0.8
1,821,400 - +1.0
1,821,400 - -1.0
1,821,403 + -0.9
1,821,404 - -1.8
1,821,404 - -0.3
1,821,404 - -0.8
1,821,404 - +0.2
1,821,439 + Psyr_1620 0.10 +0.6
1,821,439 + Psyr_1620 0.10 -0.8
1,821,439 + Psyr_1620 0.10 +0.8
1,821,439 + Psyr_1620 0.10 +0.8
1,821,439 + Psyr_1620 0.10 -0.4
1,821,440 - Psyr_1620 0.10 -0.0
1,821,440 - Psyr_1620 0.10 +1.5
1,821,440 - Psyr_1620 0.10 -0.1
1,821,440 - Psyr_1620 0.10 -0.1
1,821,453 + Psyr_1620 0.12 +0.8
1,821,457 + Psyr_1620 0.12 +0.3
1,821,458 - Psyr_1620 0.12 +0.8
1,821,478 + Psyr_1620 0.14 -0.7
1,821,478 + Psyr_1620 0.14 -1.6
1,821,478 + Psyr_1620 0.14 -2.1
1,821,479 - Psyr_1620 0.14 +0.5
1,821,559 + Psyr_1620 0.20 +0.6
1,821,559 + Psyr_1620 0.20 +0.1
1,821,559 + Psyr_1620 0.20 -0.8
1,821,559 + Psyr_1620 0.20 +2.2
1,821,559 + Psyr_1620 0.20 +1.4
1,821,559 + Psyr_1620 0.20 -0.1
1,821,559 + Psyr_1620 0.20 +0.8
1,821,559 + Psyr_1620 0.20 -0.8
1,821,560 - Psyr_1620 0.20 -1.0
1,821,560 - Psyr_1620 0.20 +0.0
1,821,560 - Psyr_1620 0.20 -0.4
1,821,560 - Psyr_1620 0.20 -1.2
1,821,661 + Psyr_1620 0.29 -0.8
1,821,662 - Psyr_1620 0.29 -0.1
1,821,724 + Psyr_1620 0.34 +0.1
1,821,724 + Psyr_1620 0.34 -0.3
1,821,724 + -0.6
1,821,724 + Psyr_1620 0.34 +0.8
1,821,724 + Psyr_1620 0.34 +1.0
1,821,724 + Psyr_1620 0.34 -0.1
1,821,725 - Psyr_1620 0.34 +0.3
1,821,725 - Psyr_1620 0.34 -2.1
1,821,725 - Psyr_1620 0.34 -0.8
1,821,725 - Psyr_1620 0.34 +0.5
1,821,725 - Psyr_1620 0.34 +1.5
1,821,725 - Psyr_1620 0.34 -1.8
1,821,801 - Psyr_1620 0.41 +2.3
1,821,818 - Psyr_1620 0.42 -3.3
1,821,848 - Psyr_1620 0.45 -0.8
1,821,922 + Psyr_1620 0.51 -0.2
1,821,922 + Psyr_1620 0.51 -0.4
1,821,923 - Psyr_1620 0.51 +1.8
1,821,923 - Psyr_1620 0.51 -0.4
1,821,923 - Psyr_1620 0.51 +0.4
1,822,054 + Psyr_1620 0.62 +0.3
1,822,054 + Psyr_1620 0.62 -1.6
1,822,054 + Psyr_1620 0.62 -1.0
1,822,055 - Psyr_1620 0.62 -1.0
1,822,055 - Psyr_1620 0.62 -0.2
1,822,186 + Psyr_1620 0.73 -0.4
1,822,186 + Psyr_1620 0.73 +0.5
1,822,187 - Psyr_1620 0.73 -0.4
1,822,187 - Psyr_1620 0.73 +0.6
1,822,187 - Psyr_1620 0.73 +1.2
1,822,187 - Psyr_1620 0.73 +1.3
1,822,199 + Psyr_1620 0.74 -0.8
1,822,199 + Psyr_1620 0.74 +0.6
1,822,200 - Psyr_1620 0.74 -0.8
1,822,200 - Psyr_1620 0.74 -2.5
1,822,231 + Psyr_1620 0.77 +0.5
1,822,232 - Psyr_1620 0.77 -1.0
1,822,232 - Psyr_1620 0.77 +0.2
1,822,232 - Psyr_1620 0.77 -0.7
1,822,313 - Psyr_1620 0.83 -1.7

Or see this region's nucleotide sequence